| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,593,985 | Δ1 bp | 17.4% | coding (68/912 nt) | PP_3170 → | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,593,985 | 0 | C | . | 17.4% | 65.7 / 9.7 | 23 | coding (68/912 nt) | PP_3170 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (13/6); new base . (2/2); total (15/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.89e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
ATCAGGAACCTTGCATTGCCTGAAATTGCACCCATCTATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCGCTGCTGCTGCCAGCCTGGGCCTGACGCGTTCGGCGGTGGGCAAGAGCATCGCCCGCCTGGAAGCCCGCATGGCGGTGCGTCTGCTCAACCGCACTACGCGCAAGCTG > NC_002947/3593850‑3594091 | aTCAGGAACCTTGCATTGCCTGAAATTGCACCCATCTATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCgc < 1:231380/136‑1 (MQ=255) ggAACCTTGCATTGCCTGAAATTGCACCCTTCTATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCgctgct > 1:18035/1‑136 (MQ=255) ggAACCTTGCATTGCCTGAAATTGCACCCATCTATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCgctgct > 1:2088/1‑136 (MQ=255) ggAACCTTGCATTGCCTGAAATTGCACCCATCTATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCgctgct > 1:307885/1‑136 (MQ=255) gAACCTTGCATTGCCTGAAATTGCACCCATCTATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCgctgctg > 1:324305/1‑136 (MQ=255) cATTGCCTGAAATTGCACCCATCTATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCGCTGCTGCTGCCAGc > 1:203381/1‑136 (MQ=255) cATTGCCTGAAATTGCACCCATCTATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCGCTGCTGCTGCCAGc > 1:434817/1‑136 (MQ=255) cATTGCCTGAAATTGCACCCATCTATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCGCTGCTGCTGCCAGc > 1:432101/1‑136 (MQ=255) gCCTGAAATTGCACCCATCTATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCGCTGCTGCTGCCAGCCTgg > 1:309427/1‑136 (MQ=255) ccATCTATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCGCTGCTGCTGCCAGCCTGGGCCTGACGCGTTcg > 2:564785/1‑136 (MQ=255) ccATCTATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCGCTGCTGCTGCCAGCCTGGGCCTGACGCGTTcg > 2:491665/1‑136 (MQ=255) ccATCTATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCGCTGCTGCTGCCAGCCTGGGCCTGACGCGTTcg < 1:288646/136‑1 (MQ=255) tATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACC‑‑‑GCTGCTGCCAGCCTGGGCCTGACGCGTTCGGCGGTggg > 1:395748/1‑136 (MQ=255) tATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACC‑‑‑GCTGCTGCCAGCCTGGGCCTGACGCGTTCGGCGGTggg > 1:398731/1‑136 (MQ=255) tATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGAGCCGCGAAGGCCGGCAGCTTCACAGCTGCTGCTGCCAGCCTGGGCCTGACGCGTTCGGCGGt > 1:382808/1‑136 (MQ=255) aTGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCGCTGCTGCTGCCAGCCTGGGCCTGACGCGTTCGGCGGTg < 1:286439/136‑1 (MQ=255) tCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACC‑‑‑GCTGCTGCCAGCCTGGGCCTGACGCGTTCGGCGGTGGGCAAGAGCATCGCCCGCCTg < 2:398731/136‑1 (MQ=255) tCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACC‑‑‑GCTGCTGCCAGCCTGGGCCTGACGCGTTCGGCGGTGGGCAAGAGCATCGCCCGCCTg < 2:395748/136‑1 (MQ=255) aaaaCACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCGCTGCTGCTGCCAGCCTGGGCCTGACGCGTTCGGCGGTGGGCAAGAGCATCGCCCGCCTGGa > 2:425688/1‑136 (MQ=255) aaCACCAAGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGGCAGCGCCGCGAAGGCCGGCAGCTTCACCGCTGCTGCTGCCAGCCTGGGCCTGACGCGTTCGGCGGTGGCCAAGAGCATCGCCCGCCTGGAAg < 2:128047/136‑1 (MQ=255) ccATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCGCTGCTGCTGCCAGCCTGGGCCTGACGCGTTCGGCGGTGGGCAAGAGCATCGCCCGCCTGGAAGCCCg > 1:434410/1‑136 (MQ=255) ccATGGAACCCAACCGCATCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGACGGCAGCTTCACCGCTGCTGCTGCCAGCCTGGGCCTGACGCGTTCGGCGGTGGCCAAGAGCATCGCCCCCCTGGAACCCCg > 2:359234/1‑136 (MQ=255) aaCCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGACCGGCAGCTTCACCGCTGCTGCTGCCAGCCTGGGCCTGACGCGTTCGGCGGTGGGCAAGAGCATCGCCCGCCTGGAAGCCCGCATGGc > 2:521451/1‑136 (MQ=255) tCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCGCTGCTGCTGCCAGCCTGGGCCTGACGCGTTCGGCGGTGGGCAAGAGCATCGCCCGCCTGGAAGCCCGCATGGCGGTGCGTCTGCt < 2:307885/136‑1 (MQ=255) cGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCGCTGCTGCTGCCAGCCTGGGCCTGACGCGTTCGGCGGTGGGCAAGAGCATCGCCCGCCTGGAAGCCCGCATGGCGGTGCGTCTGCTc > 1:363534/1‑136 (MQ=255) aCATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCGCTGCTGCTGCCAGCCTGGGCCTGACGCGTTCGGCGGTGGGCAAGAGCATCGCCCGCCTGGAAGCCCGCATGGCGGTGCGTCTGCTCAACCg > 2:487382/1‑136 (MQ=255) ccgccTTCGTCAGCGCCGCGAAGCCCGGCAGCTTCACCGCTGCTGCTGCCAGCCTGGGCCTGACGCGTTCGGCGGTGGGCAAGAGCATCGCCCGCCTGGAAGCCCGCATGGCGGTGCGTCTGCTCAACCGCACTAc < 1:521451/136‑1 (MQ=255) cAGCGCCGCGAAGGCCGGCAGCTTCACCGCTGCTGCTGCCAGCCTGGGCCTGACGCGTTCGGCGGTGGGCAAGAGCATCGCCCGCCTGGAAGCCCGCATGGCGGTGCGTCTGCTCAACCGCACTACGCGCAAGCTg < 1:425688/136‑1 (MQ=255) | ATCAGGAACCTTGCATTGCCTGAAATTGCACCCATCTATGGCGGTTCGATCAGCGTCAGGAAAACACCATGGAACCCAACCGCTTCGGCGACATCGCCGCCTTCGTCAGCGCCGCGAAGGCCGGCAGCTTCACCGCTGCTGCTGCCAGCCTGGGCCTGACGCGTTCGGCGGTGGGCAAGAGCATCGCCCGCCTGGAAGCCCGCATGGCGGTGCGTCTGCTCAACCGCACTACGCGCAAGCTG > NC_002947/3593850‑3594091 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |