New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3368518 =	6 (0.330)	4 (0.220)	4/244	NT	34.8%	intergenic (+219/‑142)	PP_2962/PP_2964	alcohol dehydrogenase/transposase
	?	NC_002947	4459337 =	9 (0.500)					coding (9/696 nt)	pcaI	3‑oxoadipate CoA‑transferase subunit A

CAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3368646‑3368518 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGG  >  NC_002947/4459337‑4459398                                                                                                                                                                                                 CAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTAAAACG                                                         >  1:420583/1‑136                                   GGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTA                       <  2:209400/136‑1                                            GCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTT              <  2:262537/136‑1                                                        CTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCCTAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGG  <  1:50594/136‑1                                                                                                                                                                                                 CAAAAGCATCAGCATAGACGGCTAGCCAGACGGTGGATGACCAGCAAGCCACGGCCTCTCGAATAACCTTTTAAATCATATATTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATAACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3368646‑3368518 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAACGTACGAGTCCATCGCCAGCGCGGTGGAAGGGATTACCGACGGTTCGACCATCATGG  >  NC_002947/4459337‑4459398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.