Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	4969834	4969847	14	2 [1]	[0] 2	PP_4377	flagellin FlaG

ACCAGGGTCCCCGTGGAATCGTCCACGGAAAAATCCAACTGCCGCTGCGAAGCTTTTACGTATTCTTGTATGTCGCTGACCGCTTTCTCGAGTTCCGGCCGCT  >  NC_002947/4969848‑4969950 |                                                                                                       accaGGGTCCCCGTGGAATCGTCCACGGAAAAATCCAACTGCCGCTGCGAAGCTTTTACGTATTCTTGTATGTCGCTGACCGCTTTCTCGAGTTCCGGCCGCt  >  1:564585/1‑103 (MQ=255) accaGGGTCCCCGTGGAATCGTCCACGGAAAAATCCAACTGCCGCTGCGAAGCTTTTACGTATTCTTGTATGTCGCTGACCGCTTTCTCGAGTTCCGGCCGCt  <  2:564585/103‑1 (MQ=255) |                                                                                                       ACCAGGGTCCCCGTGGAATCGTCCACGGAAAAATCCAACTGCCGCTGCGAAGCTTTTACGTATTCTTGTATGTCGCTGACCGCTTTCTCGAGTTCCGGCCGCT  >  NC_002947/4969848‑4969950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑