| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,226,841 | T→C | 50.0% | Y586C (TAC→TGC) | PP_1963 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,226,841 | 0 | T | C | 50.0% | ‑6.5 / 7.1 | 8 | Y586C (TAC→TGC) | PP_1963 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (2/2); new base C (2/2); total (4/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.68e-01 | |||||||||||
AAATTTTACCTTCCCAGCGCAGGTCAGAGGACCGTGCACCTTCGCTTTCATTTTCCAGCTCATACTCAATATGAGCTAGACGCTCCATCAAATAGGGTAGTGAGTCTTCGTAAATTCGAACCTGGGAGCAGCCGATGCACTTGTCTATGCTGTAGCATTTCTTTCCATTAGGAACCGATTGCTCGAATCCCTTCCAGTCTGGTTGATACTGATTTTCGCATCCCCAGAGCGGGCCGGGATGACCA > NC_002947/2226731‑2226975 | aaaTTTTACCTTCCCAGCGCAGGTCAGAGGACCGTGCACCTTCGCTTTCATTTTCCAGCTCATACTCAATATGAGCTAGACGCTCCATCAAATAGGGTAGTGAGTCTTCGTAAATTCGAACCTGGGAGCAGCCGAt < 2:48267/136‑1 (MQ=255)aaaTTTTACCTTCCCAGCGCAGGTCAGAGGACCGTGCACCTTCGCTTTCATTTTCCAGCTCATACTCAATATGAGCTAGACGCTCCATCAAATAGGGTAGTGAGTCTTCGTAAATTCGAACCTGGGAGCAGCCGAt < 2:552583/136‑1 (MQ=255) gCACCTTCGCTTTCATTTTCCAGCTCATACTCAATATGAGCTAGACGCTCCATCAAATAGGGTAGTGAGTCTTCGTAAATTCGAACCTGGGAGCAGCCGATGCACTTGTCTATGCTGTAGCATTTCTTTCCATTat > 1:95008/1‑135 (MQ=255) cTTTCATTTTCCAGCTCATACTCAATATGAGCTAGACGCTCCATCAAATAGGGTAGTGAGTCTTCGTAAATTCGAACCTGGGAGCAGCCGATGCACTTGTCTATGCTGTAGCATTTCTTTCCATTAGGAACCGAtt > 1:64004/1‑136 (MQ=255) aTCAAATAGGGTAGTGAGTCTTCGCAAATTCGAACCTGGGAGCAGCCGATGCACTTGTCTATGCTGTAGCAtttc < 1:90282/75‑1 (MQ=255) aTCAAATAGGGTAGTGAGTCTTCGCAAATTCGAACCTGGGAGCAGCCGATGCACTTGTCTATGCTGTAGCAtttc < 1:92852/75‑1 (MQ=255) aTCAAATAGGGTAGTGAGTCTTCGCAAATTCGAACCTGGGAGCAGCCGATGCACTTGTCTATGCTGTAGCAtttc > 2:90282/1‑75 (MQ=255) aTCAAATAGGGTAGTGAGTCTTCGCAAATTCGAACCTGGGAGCAGCCGATGCACTTGTCTATGCTGTAGCAtttc > 2:92852/1‑75 (MQ=255) ttAAATTCGAACCTGGGAGCAGCCGATGCACTTGTCTATGCTGTAGCATTTCTTTCCATTAGGAACCGATTGCTCGAATCCCTTCCAGTCTGGTTGATACTGATTTTCGCATCCCCAGAGCGGGCCGGGATGACCa < 1:76588/135‑1 (MQ=255) | AAATTTTACCTTCCCAGCGCAGGTCAGAGGACCGTGCACCTTCGCTTTCATTTTCCAGCTCATACTCAATATGAGCTAGACGCTCCATCAAATAGGGTAGTGAGTCTTCGTAAATTCGAACCTGGGAGCAGCCGATGCACTTGTCTATGCTGTAGCATTTCTTTCCATTAGGAACCGATTGCTCGAATCCCTTCCAGTCTGGTTGATACTGATTTTCGCATCCCCAGAGCGGGCCGGGATGACCA > NC_002947/2226731‑2226975 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |