| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,720,036 | C→T | 19.0% | F97F (TTC→TTT) | PP_2377 → | acyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,720,036 | 0 | C | T | 19.0% | 44.8 / 4.8 | 21 | F97F (TTC→TTT) | PP_2377 | acyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (9/8); new base T (2/2); total (11/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.14e-01 | |||||||||||
GCTGGTCATCTACCTGTCGACCCGCGACAAAACCGTCGAGCCGCGCCAGTTCCTGCTCAATCGGGCGCTGCGCATCGTCCCTGCCTACTGGTTCTACACAGCCCTGATGGCCATATTGCTACTGGCATTCAGCCAATGGATGCCACATCAGTCGTTTGACTGGCGGCACCTGTTCCTGTCGCTGCTGTTCATCCCGGCGGAAAACCCAGGTGGCTATGGCCTGTACCCGACCCTGAACGTGGGCTGGACGCTGAACTTCGAGAT > NC_002947/2719907‑2720170 | gCTGGTCATCTACCTGTCGACCCGCGACAAAACCGTCGAGCCGCGCCAGTTCCTGCTCAATCGGGCCCAGCGCATCGTCCCACCCTACTCGATCTACACACCCCTGATTTCCATATTTCTACTCGCATTCATCCaa > 2:226688/1‑136 (MQ=255) aTCTACCTGTCGACCCGCGACAAAACCGTCGAGCCGCGCCAGTTCCTGCTCAATCGGGCGCTGCGCATCGTCCCTGCCTACTGGTTCTACACAGCCCTGATGGCCATATTGCTACTGGCATTCAGCCAATGGATGc > 2:551201/1‑136 (MQ=255) aTCTACCTGTCGACCCGCGACAAAACCGTCGAGCCGCGCCAGTTCCTGCTCAATCGGGCGCTGCGCATCGTCCCTGCCTACTGGTTCTACACAGCCCTGATGGCCATATTGCTACTGGCATTCAGCCAATGGATGc > 2:210816/1‑136 (MQ=255) aaCCGTCGAGCCGCGCCAGTTCCTGCTCAATCGGGCGCTGCGCATCGTCCCTGCCTACTGGTTCTACACAGCCCTGATGGCCATATTGCTACTGGCATTCAGCCAATGGATGCCACATCAGTCGTTTGACTggcgg < 1:32639/136‑1 (MQ=255) aaCCGTCGAGCCGCGCCAGTTCCTGCTCAATCGGGCGCTGCGCATCGTCCCTGCCTACTGGTTCTACACAGCCCTGATGGCCATATTGCTACTGGCATTCAGCCAATGGATGCCACATCAGTCGTTTGACTggcgg < 1:494129/136‑1 (MQ=255) aaTCGGGCGCTGCGCATCGTCCCTGCCTACTGGTTCTACACAGCCCTGATGGCCATATTGCTACTGGCATTCAGCCAATGGATGCCACATCAGTCGTTTGACTGGCGGCACCTGTTCCTGTCGCTGCTGTTCATcc > 2:394004/1‑136 (MQ=255) gcTGCGCATCGTCCCTGCCTACTGGTTCTACACAGCCCTGATGGCCATATTGCTACTGGCATTCAGCCAATGGATGCCACATCAGTCGTTTGACTGGCGGCACCTGTTCCTGTCGCTGCTGTTCATCCCGGCGGaa > 2:59426/1‑136 (MQ=255) gcATCGTCCCTGCCTACTGGTTCTACACAGCCCTGATGGCCATATTGCTACTGGCATTCAGCCAATGGATGCCACATCAGTCGTTTGACTGGCGGCACCTGTTCCTGTCGCTGCTGTTCATCCCGGCGGAAAAccc < 1:210816/136‑1 (MQ=255) gcATCGTCCCTGCCTACTGGTTCTACACAGCCCTGATGGCCATATTGCTACTGGCATTCAGCCAATGGATGCCACATCAGTCGTTTGACTGGCGGCACCTGTTCCTGTCGCTGCTGTTCATCCCGGCGGAAAAccc < 1:394004/136‑1 (MQ=255) gcATCGTCCCTGCCTACTGGTTCTACACAGCCCTGATGGCCATATTGCTACTGGCATTCAGCCAATGGATGCCACATCAGTCGTTTGACTGGCGGCACCTGTTCCTGTCGCTGCTGTTCATCCCGGCGGAAAAccc < 1:551201/136‑1 (MQ=255) gcATCGTCCCTGCCTACTGGTTCTACACAGCCCTGATGGCCATATTGCTACTGGCATTCAGCCAATGGATGCCACATCAGTCGTTTGACTGGCGGCACCTGTTCCTGTCGCTGCTGTTCATCCCGGCGGAAAAccc < 1:59426/136‑1 (MQ=255) tGGTTCTACACAGCCCTGATGGCCATATTGCTACTGGCATTCAGCCAATGGATGCCACATCAGTCGTTTGACTGGCGGCACCTGTTCCTGTCGCTGCTGTTCATCCCGGCGGAAAACCCAGGTGGCTATGGCCTGt < 1:429607/136‑1 (MQ=255) gTTCTACACAGCCCTGATGGCCATATTGCTACTGGCATTCAGCCAATGGATGCCACATCAGTCGTTTGACTGGCGGCACCTGTTCCTGTCGCTGCTGTTCATCCCGGCGGAAAACCCAGGTGGCTATGGCCTGTAc > 2:214901/1‑136 (MQ=255) cacaGCCCTGATGGCCATATTGCTACTGGCATTCAGCCAATGGATGCCACATCAGTCGTTTGACTGGCGGCACCTGTTCCTGTCGCTGCTGTTCATCCCGGCGGAAAACCCAGGTGGCTATGGCCTGTACCCGAcc > 1:256337/1‑136 (MQ=255) cacaGCCCTGATGGCCATATTGCTACTGGCATTCAGCCAATGGATGCCACATCAGTCGTTTGACTGGCGGCACCTGTTCCTGTCGCTGCTGTTCATCCCGGCGGAAAACCCAGGTGGCTATGGCCTGTACCCGAcc > 1:388566/1‑136 (MQ=255) tGATGGCCATATTGCTACTGGCATTTAGCCAATGGATGCCACATCAGTCGTTTGACTGGCGGCACCTGTTCCTGTCg > 1:532337/1‑77 (MQ=255) tGATGGCCATATTGCTACTGGCATTTAGCCAATGGATGCCACATCAGTCGTTTGACTGGCGGCACCTGTTCCTGTCg < 2:529831/77‑1 (MQ=255) tGATGGCCATATTGCTACTGGCATTTAGCCAATGGATGCCACATCAGTCGTTTGACTGGCGGCACCTGTTCCTGTCg < 2:532337/77‑1 (MQ=255) tGATGGCCATATTGCTACTGGCATTTAGCCAATGGATGCCACATCAGTCGTTTGACTGGCGGCACCTGTTCCTGTCg > 1:529831/1‑77 (MQ=255) atTGCTACTGGCATTCAGCCAATGGATGCCACATCAGTCGTTTGACTGGCGGCACCTGTTCCTGTCGCTGCTGTTCATCCCGGCGGAAAACCCAGGTGGCTATGGCCTGTACCCGACCCTGAACGTGGGCTGGACg > 2:29660/1‑136 (MQ=255) tCAGCCAATGGATGCCACATCAGTCGTTTGACTGGCGGCACCTGTTCCTGTCGCTGCTGTTCATCCCGGCGGAAAACCCAGGTGGCTATGGCCTGTACCCGACCCTGAACGTGGGCTGGACGCTGAACTTCGAGAt < 2:95527/136‑1 (MQ=255) | GCTGGTCATCTACCTGTCGACCCGCGACAAAACCGTCGAGCCGCGCCAGTTCCTGCTCAATCGGGCGCTGCGCATCGTCCCTGCCTACTGGTTCTACACAGCCCTGATGGCCATATTGCTACTGGCATTCAGCCAATGGATGCCACATCAGTCGTTTGACTGGCGGCACCTGTTCCTGTCGCTGCTGTTCATCCCGGCGGAAAACCCAGGTGGCTATGGCCTGTACCCGACCCTGAACGTGGGCTGGACGCTGAACTTCGAGAT > NC_002947/2719907‑2720170 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |