| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,040,838 | C→T | 13.8% | intergenic (+2/‑43) | gbd → / → PP_2651 | 4‑hydroxybutyrate dehydrogenase/MFS transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,040,838 | 0 | C | T | 13.8% | 73.4 / 4.3 | 29 | intergenic (+2/‑43) | gbd/PP_2651 | 4‑hydroxybutyrate dehydrogenase/MFS transporter |
| Reads supporting (aligned to +/- strand): ref base C (11/14); new base T (2/2); total (13/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01 | |||||||||||
CCCGGACCTGTTCCCGCGCATCGTCCAGGGTGCGTTGGCCGATCACAGCCACCGCACCAACCCGCGTGAGGCATCTGCCGAGGACTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCAACCCGGGCTTGCCCGCGAACCTGAAGCGGTCGCCAGTTCGAACCCGTTCAGAAAGTACCAGGT > NC_002947/3040722‑3040963 | cccGGACCTGTTCCCGCGCATCGTCCAGGGTGCGTTGGCCGATCACAGCCACCGCACCAACCCGCGTGAGGCATCTGCCGAGGACTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAAcc < 1:15153/136‑1 (MQ=255) tGTTCCCGCGCATCGTCCAGGGTGCGTTGGCCGATCACAGCCACCGCACCAACCCGCGTGAGGCATCTGCCGAGGACTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATaacaa < 1:325242/136‑1 (MQ=255) ggTTCCCGCGCATCGTCCAGGGTGCGTTGGCCGATCACAGCCACCGCACCAACCCGCGTGAGGCATCTGCCGAGGACTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATaacaa < 1:355897/135‑1 (MQ=255) gcgcATCGTCCAGGGTGCGTTGGCCGATCACAGCCACCGCACCAACCCGCGTGAGGCATCTGCCGAGGACTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGt < 2:471927/136‑1 (MQ=255) cGTTGGCCGATCACAGCCACCGCACCAACCCGCGTGAGGCATCTGCCGAGGACTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATAcc < 1:253583/136‑1 (MQ=255) ggCCGATCACAGCCACCGCACCAACCCGCGTGAGGCATCTGCCGAGGACTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCaaaa > 1:529359/1‑135 (MQ=255) ggCCGATCACAGCCACCGCACCAACCCGCGTGAGGCATCTGCCGAGGACTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCaaaa > 1:3555/1‑135 (MQ=255) ggCCGATCACAGCCACCGCACCAACCCGCGTGAGGCATCTGCCGAGGACTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAat > 2:459227/1‑136 (MQ=255) ggCCGATCACAGCCACCGCACCAACCCGCGTGAGGCATCTGCCGAGGACTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAat > 1:430444/1‑136 (MQ=255) ccGATCACAGCCACCGCACCAACCCGCGTGAGGCATCTGCCGAGGACTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAatat < 1:247774/136‑1 (MQ=255) cacaGCCACCGCACCAACCCGCGTGAGGCATCTGCCGAGGACTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCa > 1:127230/1‑136 (MQ=255) caGCCACCGCACCAACCCGCGTGAGGCATCTGCCGAGGACTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCAAc > 1:194008/1‑136 (MQ=255) cACCAACCCGCGTGAGGCATCTGCCGAGGACTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAAAAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCAACCCGGGCTTg > 2:396810/1‑136 (MQ=255) aCCAACCCGCGTGAGGCATCTGCCGAGGACTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCAACCCGGGCTTGc < 2:105400/136‑1 (MQ=255) aaCCCGCGTGAGGCATCTGCCGAGGACTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCAACCCGGGCTTGCCcg < 2:218919/136‑1 (MQ=255) aGGCATCTGCCGAGGACTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCAACCCGGGCTTGCCCGCGAACCTGaa < 2:139460/136‑1 (MQ=255) aCTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCAACCCGGGCTTGCCCGCGAACCTGAAGCGGTCGCCAGTTCg < 1:112448/136‑1 (MQ=255) aCTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCACATGAATACCAAATATGCGCAACCCGGGCTTGCCCGCGAACCTGAAGCGGTCGCCAGTTCg > 2:415183/1‑136 (MQ=255) ggCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCAACCCGGGCTTGCCCGCGAACCTGAAGCGGTCGCCAGTTCGAACCCGTTc < 1:390580/136‑1 (MQ=255) ggCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCAACCCGGGCTTGCCCGCGAACCTGAAGCGGTCGCCAGTTCGAACCCGTTc < 1:560723/136‑1 (MQ=255) gctTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCAACCCGGGCTTGCCCGCGAACCTGAAGCGGTCGCCAGTTCGAACCCGTTCAGaa > 1:546962/1‑136 (MQ=255) ttGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCAACCCGGGCTTGCCCGCGAACCTGAAGCGGTCGCCAGTTCGAACCCGTTCAGAAAg < 1:55302/136‑1 (MQ=255) gAAGCGTCGATGTAAGTCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCAACCCGGGCTTGCCCGCGAACCTGAAGCGGt < 2:382330/109‑1 (MQ=255) gAAGCGTCGATGTAAGTCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCAACCCGGGCTTGCCCGCGAACCTGAAGCGGt < 2:385159/109‑1 (MQ=255) gAAGCGTCGATGTAAGTCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCAACCCGGGCTTGCCCGCGAACCTGAAGCGGt > 1:382330/1‑109 (MQ=255) gAAGCGTCGATGTAAGTCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCAACCCGGGCTTGCCCGCGAACCTGAAGCGGt > 1:385159/1‑109 (MQ=255) gAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCAACCCGGGCTTGCCCGCGAACCTGAAGCGGTCGCCAGTTCGAACCCGTTCAGAAAGTa > 1:30271/1‑136 (MQ=255) gAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCAACCCGGGCTTGCCCGCGAACCTGAAGCGGTCGCCAGTTCGAACCCGTTCAGAAAGTa > 2:480478/1‑136 (MQ=255) tCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCAACCCGGGCTTGCCCGCGAACCTGAAGCGGTCGCCAGTTCGAACCCGTTCAGAAAGTACCAGGt < 2:430444/136‑1 (MQ=255) | CCCGGACCTGTTCCCGCGCATCGTCCAGGGTGCGTTGGCCGATCACAGCCACCGCACCAACCCGCGTGAGGCATCTGCCGAGGACTACCAGTGGCTGCTTGAAGCGTCGATGTAAGCCGTTACCTGCTGTTCAACCAATAACAACAAAAGTGAACGCCCATGAATACCAAATATGCGCAACCCGGGCTTGCCCGCGAACCTGAAGCGGTCGCCAGTTCGAACCCGTTCAGAAAGTACCAGGT > NC_002947/3040722‑3040963 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |