| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,674,892 | A→C | 20.0% | intergenic (+135/‑26) | PP_3236 → / → PP_3237 | lipoprotein OprI/universal stress protein family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,674,892 | 0 | A | C | 20.0% | 34.2 / 3.8 | 20 | intergenic (+135/‑26) | PP_3236/PP_3237 | lipoprotein OprI/universal stress protein family protein |
| Reads supporting (aligned to +/- strand): ref base A (8/8); new base C (2/2); total (10/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.70e-01 | |||||||||||
TGCAGGCGTTCGCACGCTTGATAAAAACCAAGCGCCAAGGGCGGCATGAACTGGATGCTGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATCATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAG > NC_002947/3674765‑3675018 | tGCAGGCGTTCGCACGCTTGATAAAAACCAAGCGCCAAGGGCGGCATGAACTGGATGCTGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAggccggcc > 2:437799/1‑136 (MQ=255) gcCAAGGGCGGCATGAACTGGATGCTGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATCATGAGCCACTATCAAc > 1:248266/1‑136 (MQ=255) gcCAAGGGCGGCATGAACTGGATGCTGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATCATGAGCCACTATCAAc > 1:336762/1‑136 (MQ=255) gcCAAGGGCGGCATGAACTGGATGCTGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATCATGAGCCACTATCAAc > 1:523510/1‑136 (MQ=255) gcCAAGGGCGGCATGAACAGGATGCTGGCAGCAGCAGTCAAACACTGCCCGCCGAAAGCCCCCTCTCGAAGCAACCCGAGCGACCTGAGTGAACAGGCCGGCCCACCGTTGGAGGTAATCAAGAGCCACTATCAAc > 1:336763/1‑136 (MQ=255) ggATGCTGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCCGGCCGGCCCACCGTTGGAGGTAAt < 1:23260/100‑1 (MQ=255) ggATGCTGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCCGGCCGGCCCACCGTTGGAGGTAAt < 1:25990/100‑1 (MQ=255) ggATGCTGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCCGGCCGGCCCACCGTTGGAGGTAAt > 2:23260/1‑100 (MQ=255) ggATGCTGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCCGGCCGGCCCACCGTTGGAGGTAAt > 2:25990/1‑100 (MQ=255) tCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATCATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGc < 1:385292/136‑1 (MQ=255) tCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATCATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGc < 1:468228/136‑1 (MQ=255) cTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATCATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGcc > 2:342602/1‑136 (MQ=255) ccccTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATCATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCAGt < 1:342602/136‑1 (MQ=255) cccTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATCATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTg > 1:251561/1‑136 (MQ=255) aGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATCATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCAt < 1:408233/136‑1 (MQ=255) aGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATCATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCAt < 1:189200/136‑1 (MQ=255) gCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATCATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATc < 1:206295/136‑1 (MQ=255) ccTGAGTGATCAGGCCGGCGCACCGTTGGAGGTAATCATGAGCCACTATCTACGCGTGTTGCTGTTCATGGGCGCATTGCTGCACCAGGCGGTGGCGCTGGAGCTGGCCGGTGGTCTGGCCCGATCTGCATCGGcc < 2:336763/136‑1 (MQ=255) ccTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATCATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGcc < 2:336762/136‑1 (MQ=255) tGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATCATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGCTCAGCATCGGCCAg > 2:27757/1‑136 (MQ=255) | TGCAGGCGTTCGCACGCTTGATAAAAACCAAGCGCCAAGGGCGGCATGAACTGGATGCTGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATCATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAG > NC_002947/3674765‑3675018 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |