| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,419,241 | C→A | 22.5% | I56I (ATC→ATA) | PP_3905 → | LuxR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,419,241 | 0 | C | A | 22.5% | 38.3 / 7.1 | 22 | I56I (ATC→ATA) | PP_3905 | LuxR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (14/3); new base A (3/2); total (17/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.48e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.68e-01 | |||||||||||
CCACACGCTGGTGGTCCGATCGACCTGGTTCCCCATCACCAGGCTGCATCGGTCGTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGACACGATCACTATCGGCGCATGGATAGGCCATCTCGGCCGAGGCCTGGCGCCTCGCGAACTGCAATGCCTGTTGGAAGTAGCCCAGGGCTTCACCACCAAGGAAATCGCCAAGCACTTCGGC > NC_002947/4419107‑4419367 | ccacACGCTGGTGGTCCGATCGACCTGGTTCCCCATCACCAGGCTGCATCGGTCGTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCa > 2:322704/1‑136 (MQ=255) cacaCGCTGGTGGTCCGATCGACCTGGTTCCCCATCACCAGGCTGCATCGGTCGTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCAt > 2:352758/1‑136 (MQ=255) acGCTGGTGGTCCGATCGACCTGGTTCCCCATCACCAGGCTGCATCGGTCGTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATggg > 2:142886/1‑135 (MQ=255) tggtggTCCGATCGACCTGGTTCCCCATCACCAGGCTGCATCGGTCGTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGCCCCATGCCGCCCACCCCCGAGCTCAAATAATGGACACg > 1:547600/1‑136 (MQ=255) gtCCGATCGACCTGGTTCCCCATCACCAGGCTGCATCGGTCGTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGACCAAAGCAGCCCACCCCCGAGATCAAATCATGGACACGATCAc > 1:227586/1‑136 (MQ=255) tCGACCTGGTTCCCCATCACCAGGCTGCATCGGTCGTGGCGTTCGCCCACCCCTGGTCCGGGGGGGTCTTGGCCGCGAGCGTCACGCCCAATGCCGCCCACCCCCGAGATCAAATCATGGACACGATCACTATCgg > 1:43743/1‑136 (MQ=25) cACCAGGCTGCATCGGTCGTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGACACGATCACTATCGGCGCATGGATAGGCCAta > 1:490973/1‑135 (MQ=255) cACCAGGCTGCATCGGTCGTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGACCGTCACGACCAATGCAGCCCACCCCCCAGAACAAATCATGGACACGATCACTATCGGCGCATGGATAGGCCAta > 1:46723/1‑135 (MQ=255) gCATCGGTCGTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCCCGACCAAATCAGCCCACCCCCGAGATCAAATCATGGACACGATCACTATCGGCGCATGGATAGGCCATCTCGGCCGAg > 2:411078/1‑136 (MQ=255) aTCGGTCGTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGCCACGATCACTATAGGCGCATGGATAGGCCAACTCGGCCGAGGc > 2:40784/1‑136 (MQ=255) gTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGACACGATCACTATCGGCGCATGGATAGGCCATCTCGGCCGAGGCCTGgcgc > 1:347262/1‑136 (MQ=255) gTGGCGTTCGCCCTCCCCAGGTCCGGGAGGTTCATGGCAGCGCGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGCCCCGATCCCTATCGGCGCATGGTTTGGCCATCTCGGCCGCGGCCTGgcgc > 1:207712/1‑136 (MQ=18) ggTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGacac < 2:323512/61‑1 (MQ=255) ggTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGacac > 1:323512/1‑61 (MQ=255) ggTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGACACGATCACTATCGGCGCATGGATAGGCCATCTCGGCCGAGGCCTGGCGCCTCGCGAACTGCAATGCCTGTTGGAAGt > 1:109329/1‑136 (MQ=255) gTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGACACGATCACTATCGGCGCATGGATAGGCCATCTCGGCCGAGGCCTGGCGCCTCGCGAACTGCAATGCCTGTTGGAAGTa < 2:490973/136‑1 (MQ=255) aTGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGACACGATCACTATCGGCGCATGGATAGGCCATCTCGGCCGAGGCCTGGCGCCTCGCGAACTGCAATGCCTGTTGGAAGTAGccc > 2:326840/1‑136 (MQ=255) gCAGCCCA‑CACCGAGATCAAA‑AATGGACACGATCACTATCGGCGCATGGATAGGCCACCTCGGCCGAGGCCTGGCGCCTCGCGAATTGCAATGCCTGTTGGAAGTAGCCCAGGGCTTCACCACCAAGGAAATCGcc > 1:512614/1‑136 (MQ=14) gCAGCCCA‑CACCGAGATCAAA‑AATGGACACGATCACTATCGGCGCATGGATAGGCCACCTCGGCCGAGGCCTGGCGCCTCGCGAATTGCAATGCCTGTTGGAAGTAGCCCAGGGCTTCACCACCAAGGAAATCGcc > 1:277724/1‑136 (MQ=14) cGAGATCAAATCATGGACACGATCACTATCGGCGCATGGATAGGCCATCTCGGCCGAGGCCTGGCGCCTCGCGAACTGCAATGCCTGTTGGAAGTAGCCCAGGGCTTCACCACCAAGGAAATCGCCAAGCACTTCg < 1:411078/136‑1 (MQ=255) gagaTCAAA‑AATGGACACGATCACTATCGGCGCATGGATAGGCCACCTCGGCCGAGGCCTGGCGCCTCGCGAATTGCAATGCCTGTTGGAAGTAGCCCAGGGCTTCACCACCAAGGAAATCGCCAAGCACTTCGGc < 2:277724/136‑1 (MQ=18) gagaTCAAA‑AATGGACACGATCACTATCGGCGCATGGATAGGCCACCTCGGCCGAGGCCTGGCGCCTCGCGAATTGCAATGCCTGTTGGAAGTAGCCCAGGGCTTCACCACCAAGGAAATCGCCAAGCACTTCGGc < 2:512614/136‑1 (MQ=18) | CCACACGCTGGTGGTCCGATCGACCTGGTTCCCCATCACCAGGCTGCATCGGTCGTGGCGTTCGCCCTCCCCTGGTCCGGGAGGTTCATGGCAGCGAGCGTCACGACCAATGCAGCCCACCCCCGAGATCAAATCATGGACACGATCACTATCGGCGCATGGATAGGCCATCTCGGCCGAGGCCTGGCGCCTCGCGAACTGCAATGCCTGTTGGAAGTAGCCCAGGGCTTCACCACCAAGGAAATCGCCAAGCACTTCGGC > NC_002947/4419107‑4419367 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |