| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 441,232 | A→C | 38.6% | Q37P (CAG→CCG) | bioF → | 8‑amino‑7‑oxononanoate synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 441,232 | 0 | A | C | 38.6% | 16.2 / 3.8 | 23 | Q37P (CAG→CCG) | bioF | 8‑amino‑7‑oxononanoate synthase |
| Reads supporting (aligned to +/- strand): ref base A (6/8); new base C (7/2); total (13/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCCGCGACAGCCTGACATGGCTTTCGACCTGGCAGCGCGCCTGGCCGAACGGCGCGCCGCAGACCTGTATCGGCAGCGGCCATTGCTGGAAAGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCAGCGGTTGCTGGCCTTCTGCAGCAATGACTACCTGGGCCTGGCCAACCACCCCGAGGTGATCGCCGCCTGGCAGGCCGGCGCCGAGCGCTGGGGTGTGGGGGGGGGGGCCTCGCACCTGGTAGTTGGCC > NC_002947/441106‑441360 | cgccgcGACAGCCTGACATGGCTTTCGACCTGGCAGCGCGCCTGGCCGAACGGCGCGCCGCAGACCTGTATCGGCAGCGGCCATTGCTGGAAAGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCAGCGGTTGcg > 2:385896/1‑135 (MQ=255)cgccgcGACAGCCTGACATGGCTTTCGACCTGGCAGCGCGCCTGGCCGAACGGCGCGCCGCAGACCTGTATCGGCAGCGGCCATTGCTGGAAAGCCCCCAAGGGCCGGAAGTGGTGGTCGACGGCCAGCGGTTGCt > 2:424714/1‑136 (MQ=255) gccgcGACAGCCTGACATGGCTTTCGACCTGGCAGCGCGCCTGGCCGAACGGCGCGCCGCAGACCTGTATCGGCAGCGGCCATTGCTGGAAAGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCAGCGGTTGCTg < 2:282279/136‑1 (MQ=255) cgACAGCCTGACATGGCTTTCGACCTGGCAGCGCGCCTGGCCGAACGGCGCGCCGCAGACCTGTATCGGCAGCGGCCATTGCTGGAAAGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCCGCGGGTGCTgggcg > 2:149779/1‑133 (MQ=255) cgACAGCCTGACATGGCTTTCGACCTGGCAGCGCGCCTGGCCGAACGGCGCGCCGCAGACCTGTATCGGCAGCGGCCATTGCTGGAAAGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCCCCCGTTGCGGGccg > 2:301413/1‑135 (MQ=255) cgACAGCCTGACATGGCTTTCGACCTGGCAGCGCGCCTGGCCGAACGGCGCGCCGCAGACCTGTATCGGCAGCGGCCATTGCTGGAAAGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCAGCGGTTGCTGGccg > 2:8384/1‑135 (MQ=255) cAGCCTGACATGGCTTTCGACCTGGCAGCGCGCCTGGCCGAACGGCGCGCCGCAGACCTGTATCGGCAGCGGCCATTGCTGGAAAGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCCGCGGGTGCGGGCCGTCt > 2:27686/1‑136 (MQ=255) aCATGGCTTTCGACCTGGCAGCGCGCCTGGCCGAACGGCGCGCCGCAGACCTGTATCGGCAGCGGCCATTGCTGGAAAGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCAGCGGTTGCTGGCCTTCTGCAGCaa < 1:45907/136‑1 (MQ=255) aCATGGCTTTCGACCTGGCAGCGCGCCTGGCCGAACGGCGCGCCGCAGACCTGTATCGGCAGCGGCCATTGCTGGAAAGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCAGCGGTTGCTGGCCTTCTGCAGCaa < 1:27686/136‑1 (MQ=255) tGGCTTTCGACCTGGCAGCGCGCCTGGCCGAACGGCGCGCCGCAGACCTGTATCGGCAGCGGCCATTGCTGGAAAGCCCGCAAGGGCCGGAAGTGGTGGTCGAGGGCCAGCGGTTGCTGGCCGTCTGGAGCaaagt > 2:321307/1‑133 (MQ=255) ccTGGCAGCGCGCCTGGCCGAACGGCGCGCCGCAGACCTGTATCGGCAGCGGCCATTGCTGGAAAGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCAGCGGTTGCTGGCCTTCTGCAGCAATGACTACCTGGGc > 2:327195/1‑136 (MQ=255) cAGCGCGCCTGGCCGAACGGCGCGCCGCAGACCTGTATCGGCAGCGGCCATTGCTGGAAAGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCAGCGGTTGCTGGCCTTCTGCAGCAATGACTACCTGGGCCTGGc < 2:517421/136‑1 (MQ=255) gcCTGGCCGAACGGCGCGCCGCAGACCTGTATCGGCAGCGGCCATTGCTGGAAAGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCCGCGGGTTCTGGGCGTCTGCCGCAATGACTACCAGGGGCTGGGCCaccc > 2:256258/1‑135 (MQ=255) cgcAGACCTGTATCGGCAGCGGCCATTGCTGGAAAGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCAGCGGTTGCTGGCCTTCTGCAGCAATGACTACCTGGGCCTGGCCAACCACCCCGAGGTGATCgccgcc < 2:411103/136‑1 (MQ=255) tGTATCGGCAGCGGCCATTGCTGGAAAGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCCGCCGGTGCTGGGCTTATGCCGCAATGACGAACAGGGGCTGGGCCACCACCCCGAGGTGTTAGCCCCCAGGCCGGc > 1:505430/1‑136 (MQ=255) tGTATCGGCAGCGGCCATTGCTGGAAAGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCCCCCGTTGCGGGGCGTGAGGGGCCATGACGACCAGGGCCAGGGCCACCCCCCCCCGGTGATCGCCCCCAGGCCGGc > 2:490609/1‑136 (MQ=255) tCGGCAGCGGCCATTGCTGGAAAGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCAGCGGTTGCTGGCCTTCTGCAGCAATGACTACCTGGGCCTGGCCAACCACCCCGAGGTGATCGCCGCCTGGCAGGCCGgc < 1:455335/136‑1 (MQ=255) tCGGCAGCGGCCATTGCTGGAAAGCCCCCAAGGGCCGGAAGTGGTGGTCGACGGCCAGCGGTTGCTGGCCTTCTGCAGCAATGACTACCTGGGCCTGGCCAACCACCCCGAGGTGATCGCCGCCTGGCAGGCCGgc < 1:424714/136‑1 (MQ=255) cGGCAGCGGCCATTGCTGGAAAGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCCGCGGTTTCTGGGCGTGTGGAGCAATGACTACCAGGGCCTGGCCAACCCCCCCCAGGTGATCGCCGCCAGGCAGGCCCgcc > 2:311011/1‑135 (MQ=255) gCTGGACACCCCGCACGGGCCGGAAGGGGGGGGCGCCGGCCCGCGGTTGCTGGCCTTCTGCACCAATGCCTCCCTGGGCCTGGCCAACCCCCCCGAGGTGATCCCCGCCGGGCAGGCCGGCGCCGCGCGCGggggg < 2:396721/136‑2 (MQ=255) ggCCGGAAGTGGTGGTCGACGGCCAGCGGTTGCTGGCCTTCTGCCGCAATGACTACCTGGGCCTGGCCAACCACCCCGAGGTGATCGCCGCCGGGCAGGCCGGCGCCGCGCGGTGGGGGGTGGGGGGGGGGGcggg > 1:133833/1‑133 (MQ=255) aGTGGGGGGCGACGGCCCGCGGTGGGTGGCCTTCTGCACCAATGCCTCCCCGGGCCCGGCCAACCACCCCGAGGGTCTCGCCGCCTGGCCCGCCGGCGCCGCGCGCGGGGGGGGGGGGGGGGGGGCCTCGCACCTg < 2:524640/136‑1 (MQ=255) caCGGCCAGCGGTTGCGGGCCTTCTGCAGCAATGACTACCTGGGCCGGGCCAACCACCCCGAGGTGATCGCCGCCTGGCCGGCCGGCGCCGAGCGCTGGGGTGTGGGGGGGGGGGCCTCGCACCTGGTAGTTGGcc < 2:143071/135‑1 (MQ=255) | CGCCGCGACAGCCTGACATGGCTTTCGACCTGGCAGCGCGCCTGGCCGAACGGCGCGCCGCAGACCTGTATCGGCAGCGGCCATTGCTGGAAAGCCCGCAAGGGCCGGAAGTGGTGGTCGACGGCCAGCGGTTGCTGGCCTTCTGCAGCAATGACTACCTGGGCCTGGCCAACCACCCCGAGGTGATCGCCGCCTGGCAGGCCGGCGCCGAGCGCTGGGGTGTGGGGGGGGGGGCCTCGCACCTGGTAGTTGGCC > NC_002947/441106‑441360 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |