| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 3,827,335 | Δ51 bp | coding (626‑676/1020 nt) | ptxS ← | 2‑ketogluconate utilization repressor |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 3827335 | 3827385 | 51 | 12 [0] | [0] 12 | ptxS | 2‑ketogluconate utilization repressor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3827334 | 0 (0.000) | 11 (0.690) | 9/250 | 0.4 | 100% | coding (677/1020 nt) | ptxS | 2‑ketogluconate utilization repressor |
| ? | NC_002947 | 3827386 = | 0 (0.000) | coding (625/1020 nt) | ptxS | 2‑ketogluconate utilization repressor | |||||
CGGCCTCGAGCAGCGCCCGGGTGACCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3827212‑3827334‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgaATGCCTGCACCCGCTCCAGGCGTGAACTGGTGCCATCGAGGGGTTCGCTGACCGCCAGGATGTCGCGGTAGCCCTGGGCTTGCAGGTGGTCCAGGGCCTGCTCGACTGCGTCAGCATTGTCCAGGCCGAC > NC_002947/3827386‑3827515 CGGCCTCGAGCAGCGCCCGGGTGACCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAATGCCTGCACCCG < 1:246280/136‑1 TGACCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAATGCCTGCACCCGCTCCAGGCGTGAACTGGTGCC < 1:73067/136‑1 GACCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGTACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAATGCCTGCACCCGCTCCAGGCGTGAACTGGTGCCA > 2:370050/1‑136 GACCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAATGCCTGCACCCGCTCCAGGCGTGAACTGGTGCCA > 2:267781/1‑136 GCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAATGCCTGCACCCGCTCCAGGCGTGAACTGGTGCCATCGg > 2:416960/1‑135 GATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAATGCCTGCACCCGCTCCAGGCGTGAACTGGTGCCATCGAGGGGTTCGCTGACCGCCAGGATGTCGCGG > 2:20447/1‑136 cTGACCACTGTGGGCAAGACACGAAGCCAGGTGGCCCTGCAGCCCGGCGCCGAATGCCTGCACCCGCTCCAGGCGTGAACTGGTGCCATCGAGGGGTTCGCTGACCGCCAGGATGTCGCGGTAGCCCTGGGCTTGC < 2:289200/135‑1 GTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAATGCCTGCACCCGCTCCAGGCGTGAACTGGTGCCATCGAGGGGTTCGCTGACCGCCAGGATGTCGCGGTAGCCCTGGGCTTGCAGGTGGTCC < 1:264846/136‑1 AAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAATGCCTGCACCCGCTCCAGGCGTGAACTGGTGCCATCGAGGGGTTCGCTGACCGCCAGGATGTCGCGGTAGCCCTGGGCTTGCAGGTGGTCCAGGGCCTGC > 1:159297/1‑136 AAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGAATGCCTGCACCCGCTCCAGGCGTGAACTGGTGCCATCGAGGGGTTCGCTGACCGCCAGGATGTCGCGGTAGCCCTGGGCTTGCAGGTGGTCCAGGGCCTGC > 2:418562/1‑136 TTGGCCCTGCAGCCCGGCGCCGAATGCCTGCACCCGCTCCAGGCGTGAACTGGTGCCATCGAGGGGTTCGCTGACCGCCAGGATGTCGCGGTAGCCCTGGGCTTGCAGGTGGTCCAGGGCCTGCTCGACTGCGTCA < 1:216801/136‑1 CGCCGAATGCCTGCACCCGCTCCAGGCGTGAACTGGTGCCATCGAGGGGTTCGCTGACCGCCAGGATGTCGCGGTAGCCCTGGGCTTGCAGGTGGTCCAGGGCCTGCTCGACTGCGTCAGCATTGTCCAGGCCGAC > 1:284780/1‑136 CGGCCTCGAGCAGCGCCCGGGTGACCGCCAAGGTGGCAACGCCGTTGAAGGTGAAGATGGCTTGCGGACCATGACCACTGTGGGCAAGAAACGAAGCCAGTTGGCCCTGCAGCCCGGCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3827212‑3827334‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgaATGCCTGCACCCGCTCCAGGCGTGAACTGGTGCCATCGAGGGGTTCGCTGACCGCCAGGATGTCGCGGTAGCCCTGGGCTTGCAGGTGGTCCAGGGCCTGCTCGACTGCGTCAGCATTGTCCAGGCCGAC > NC_002947/3827386‑3827515 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |