| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,484,303 | T→G | V125G (GTC→GGC) | yhdX → | amino acid ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,484,303 | 0 | T | G | 92.9% | 44.6 / ‑4.3 | 14 | V125G (GTC→GGC) | yhdX | amino acid ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base G (10/3); total (11/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.39e-01 | |||||||||||
TTCGTCATCGGCCTGCTCAATACGCTGTTGGTGACCTTCATCGGCGTCATTCTGGCGACGATACTGGGCTTCATCATCGGTGTGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGTCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTCGCCGTGTTCCTGACCCTGCCGGGACCGCGGGGCAGCATCAACATCGAGGACATGTTCTTCATCAGCA > NC_002947/1484176‑1484428 | ttCGTCATCGGCCTGCTCAATACGCTGTTGGTGACCTTCATCGGCGTCATTCTGGCGACGATACTGGGCTTCATCATCGGTGTGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGGCTATGTgg > 1:260310/1‑136 (MQ=255) gCCTGCTCAATACGCTGTTGGTGACCTTCATCGGCGTCATTCTGGCGACGATACTGGGCTTCATCATCGGTGTGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGGCTATGTGGAAACCTTccc > 1:207252/1‑135 (MQ=255) gCCTGCTCAATACGCTGTTGGTGACCTTCATCGGCGTCATTCTGGCGACGATACTGGGCTTCATCATCGGTGTGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGGCTATGTGGAAACCTTCCg > 2:210685/1‑136 (MQ=255) cATCGGCGTCATTCTGGCGACGATACTGGGCTTCATCATCGGTGTGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTg > 2:231519/1‑136 (MQ=255) tCTGGCGACGATACTGGGCTTCATCATCGGTGTGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTc < 1:58955/136‑1 (MQ=255) catcGGTGTGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTCGCCGTGTTCCTGACCCTGCCGGGa > 1:318147/1‑136 (MQ=255) catcGGTGTGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTCGCCGTGTTCCTGACCCTGCCGGGa > 1:440350/1‑136 (MQ=255) gtgtGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTCGCCGTGTTCCTGACCCTGCCGGGACcgcg > 1:316697/1‑136 (MQ=255) cGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTCCGCTGTTGTTGCAGATCCTGTTCTGGTATTTCGCCGTGTTCCTGACCCTGCCGGGACCGCGGGgcagca < 1:210685/136‑1 (MQ=255) acaaGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTCGCCGTGTTCCTGACCCTGCCGGGACCGCGGGGCAGCATCAACATCGAGGACATGTTCTtcat > 1:308041/1‑136 (MQ=255) acaaGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTCGCCGTGTTCCTGACCCTGCCGGGACCGCGGGGCAGCATCAACATCGAGGACATGTTCTtcat > 1:79974/1‑136 (MQ=255) acaaGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTCGCCGTGTTCCTGACCCTGCCGGGACCGCGGGGCAGCATCAACATCGAGGACATGTTCTtcat < 2:260310/136‑1 (MQ=255) gCTGGCGACCGTCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTCGCCGTGTTCCTGACCCTGCCGGGACCGCGGGGCAGCATCAACATCGAGGACATGTTCTTCATCAGc > 1:236362/1‑136 (MQ=255) cTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTCGCCGTGTTCCTGACCCTGCCGGGACCGCGGGGCAGCATCAACATCGAGGACATGTTCTTCATCAGCa > 2:320029/1‑136 (MQ=255) | TTCGTCATCGGCCTGCTCAATACGCTGTTGGTGACCTTCATCGGCGTCATTCTGGCGACGATACTGGGCTTCATCATCGGTGTGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGTCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTCGCCGTGTTCCTGACCCTGCCGGGACCGCGGGGCAGCATCAACATCGAGGACATGTTCTTCATCAGCA > NC_002947/1484176‑1484428 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |