| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,270,875 | Δ1 bp | 30.8% | coding (1491/1518 nt) | PP_4643 → | xanthine/uracil permease family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,270,875 | 0 | C | . | 30.8% | 28.9 / 9.4 | 13 | coding (1491/1518 nt) | PP_4643 | xanthine/uracil permease family protein |
| Reads supporting (aligned to +/- strand): ref base C (6/3); new base . (2/2); total (8/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 | |||||||||||
CTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGCGCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGAGCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACC > NC_002947/5270740‑5270996 | cTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTc > 2:153288/1‑136 (MQ=255) cAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCTCGGCAATGAAACGGTCAGGCGCACGGCCGTTg > 1:111425/1‑136 (MQ=255) cAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGCGCACGGCCGTTg > 2:79363/1‑136 (MQ=255) cATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGCGCACGGCCGTTGCCGAGCACTGa > 1:292808/1‑136 (MQ=255) cATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGT‑AGGCGCACGGCCGTTGCCGAGCACTGAc > 1:171193/1‑136 (MQ=255) cATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGT‑AGGCGCACGGCCGTTGCCGAGCACTGAc > 1:172760/1‑136 (MQ=255) aaGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGCGCACGGCCGTTGCCGAGCACTGACGGGt > 1:164978/1‑101 (MQ=255) aaGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGCGCACGGCCGTTGCCGAGCACTGACGGGt < 2:164978/101‑1 (MQ=255) tGTTCTATGCCGTGGGTAACTAAGTGCCTATGCTGTAACTGGACGAGCACGGAAATTAACCGGT‑AGGCGCACGGCCGTTGCGGAGCACTGACGGGTTGCAGGAGCGAGCTTGCTCGCTCCTGCACGCTATTCGAAc < 2:172760/136‑1 (MQ=255) tGTTCGATGCCGTGGGTAACTATGGGCCTATGCTGTAACTGGACGAGCACGGAAATGAACCGGT‑TGGCGCAGGGCCGTTGCCGAGCACTGAGGGGTTGCAGGAGCGAGCTTGCGCGCTCCTGCACGCTATTCGAAc < 2:171193/136‑1 (MQ=255) gAGCACGGCAATGAAACGGTCAGGCGCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGAGCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAAt < 1:152194/96‑1 (MQ=255) gAGCACGGCAATGAAACGGTCAGGCGCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGAGCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAAt > 2:152194/1‑96 (MQ=255) gAGCACGGCAATGAAACGGTCAGGCGCACGGCCGTTGCCGAGCACTGACGGGTTGCACGCGCGAGGGTTCTGCGGCCTGCACCCTATTCGAACAATTCATCCAGCGCCCGGTACACCCGCGGAACGGCAAtacacc > 2:225974/1‑131 (MQ=255) ggCAATGAAACGGTCAGGCGCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGAGCGAGCTGGCGCGCTCCTGCACGCTATTAGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAAcc < 1:79363/136‑1 (MQ=255) | CTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGCGCACGGCCGTTGCCGAGCACTGACGGGTTGCAGGAGCGAGCTTGCTCGCTCCTGCACGCTATTCGAACAATGCATCCAGCGCCTGTTCCAGCCGGGTAACGGCAATCACCTGCAACC > NC_002947/5270740‑5270996 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |