Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	3949923	3949988	66	5 [1]	[1] 2	PP_3483	type II secretion system protein

GCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTG  >  NC_002947/3949787‑3949923                                                                                                                                        |  gcGTTCCAGGCAGTCGAGCTGGCGCTCGTCAGTGGCTTGGAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCtgt   <  1:274009/136‑1 (MQ=255) gcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCTGACGGGGCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCtgt   <  2:286190/136‑1 (MQ=255) gcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCtgt   <  1:265855/136‑1 (MQ=255) gcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCGGGGCCAGGTGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCtgt   <  1:180736/136‑1 (MQ=255)  cGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCtgtg  <  2:150598/136‑1 (MQ=255)                                                                                                                                        |  GCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTG  >  NC_002947/3949787‑3949923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑