Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	4478942	4479012	71	2 [1]	[1] 2	PP_3968	sensor histidine kinase

CTGAGCCCTTTTCTTCTGCCGCGTAGCTTGAATATCTGCCCTCTGGCTTGAACAGATAGGGCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTG  >  NC_002947/4478958‑4479148                                                        |                                                                                                                                        cTGAGCCCTTTTCTTCTGCCGCGTAGCTTGAATATCTGCCCTCTGGCTTGAACAGATAGGGCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGt                                                         >  2:150086/1‑136 (MQ=255)                                                        aTAGGGCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTg  <  2:159540/136‑1 (MQ=255)                                                        |                                                                                                                                        CTGAGCCCTTTTCTTCTGCCGCGTAGCTTGAATATCTGCCCTCTGGCTTGAACAGATAGGGCATCACATCGCTGGGAATCGGCTCTCCGGAATTGTGCACGCTGAAGCGCGGAACTCCGGCTTCGCTGAAGAAAGTGACCTGGATCGGTAGCGTCGAGTCACCATGGAGCAGGGCATTGCCAATCAAATTG  >  NC_002947/4478958‑4479148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑