Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	4983689	4983723	35	2 [1]	[1] 3	flgE	flagellar hook protein FlgE

TGCGACACCGCGGCAGTCTTTACCCCGGTGCCGATCACGGTCTTGCCCGCGCTGGTGCCGCGAATGGAGTTGGAGTACTGGTCGGCGAACTCGGCACGCGACGACTTGAAGCCGGTGGTGGCAACGTTGGCAATGT  >  NC_002947/4983719‑4983854      |                                                                                                                                   ggCGACACCGCGGCAGTCTTTACCCCGGTGCCGAGCACGGTCTTGCCCGCGCTGGGGCCGCGAATGGAGTTGGAGTACTGGTCGGCGAACTCGGCACGCGACGACTTGAAGCCGGTGGTGGCAACGTTGGCAAtgt  <  2:63544/135‑1 (MQ=255)      cacCGCGGCAGTCTTTACCCCGGTGCCGATCACGGTCTTGCCCGCGCTGGTGCCGCGAATGGAGTTGGAGTACTGGTCGGCGAACTCGGCACGCGACGACTTGAAGCCGGTGGTGGCAACGtt          >  1:281536/1‑123 (MQ=255)      cacCGCGGCAGTCTTTACCCCGGTGCCGATCACGGTCTTGCCCGCGCTGGTGCCGCGAATGGAGTTGGAGTACTGGTCGGCGAACTCGGCACGCGACGACTTGAAGCCGGTGGTGGCAACGtt          <  2:281536/123‑1 (MQ=255)      |                                                                                                                                   TGCGACACCGCGGCAGTCTTTACCCCGGTGCCGATCACGGTCTTGCCCGCGCTGGTGCCGCGAATGGAGTTGGAGTACTGGTCGGCGAACTCGGCACGCGACGACTTGAAGCCGGTGGTGGCAACGTTGGCAATGT  >  NC_002947/4983719‑4983854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑