| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,824,415 | A→G | 100% | I245T (ATC→ACC) | kguT ← | 2‑ketogluconate transporter, putative |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,824,415 | 0 | A | G | 100.0% | 28.0 / NA | 9 | I245T (ATC→ACC) | kguT | 2‑ketogluconate transporter, putative |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (5/4); total (5/4) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CACCATTGCCAGCACCGCCGCCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGTTCGCCGCCTGCTTGAGGATCGACGGCAGCCACAGCACGAAGCCATACACGCCGATGCTCCAGCAGAAGTACTGCAGCGCCAGGATGATCACTTGCGGCGAGCGGAACGCTTCGCGGTAGTTCTTTACAGGCTTGATACCCTGCTGCTCGGCAGCCAGCGCCTGCGCCA > NC_002947/3824294‑3824529 | caccaTTGCCAGCACCGCCGCCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGTTCGCCGCCTGCTTGAGGATCGACGGCAGCCACAGCACGAAGCCATACACGCCGGTGCTCCAGCAGAAg > 2:239674/1‑136 (MQ=255) aGCACCGCCGCCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGTTCGCCGCCTGCTTGAGGATCGACGGCAGCCACAGCACGAAGCCATACACGCCGGTGCTCCAGCAGAAGTACTGCAgcg > 2:149979/1‑136 (MQ=255) cagccGGCCTGCACGATATCGACGTTCGCCGCCTGCTTGAGGATCGACGGCAGCCACAGCACGAAGCCATACACGCCGGTGCTCCAGCAGAAGTACTGCAGCGCCAGGATGATCACTTGCGGCGAGCGGAACGCtt > 1:116858/1‑136 (MQ=255) cGATATCGACGTTCGCCGCCTGCTTGAGGATCGACGGCAGCCACAGCACGAAGCCATACACGCCGGTGCTCCAGCAGAAGTACTGCAGCGCCAGGATGATCACTTGCGGCGAGCGGAACGCTTCGCGGTAGTTCtt < 1:116099/136‑1 (MQ=255) atatCGACGTTCGCCGCCTGCTTGAGTATCGACGGCAGCCACAGCACGAAGCCATACACGCCGGTGCTCCAGCAGAAGTACTGCAGCGCCAGGATGATCACTTGCGGCGAGCGGAACGCTTCGCGGTAGTTCTTTa < 2:204655/136‑1 (MQ=255) gccgccTGCTTGAGGATCGACGGCAGCCACAGCACGAAGCCATACACGCCGGTGCTCCAGCAGAAGTACTGCAGCGCCAGGATGATCACTTGCGGCGAGCGCAACGCTTCGCGGTAGTTCTTTACAGGCTTGATAc > 1:254234/1‑136 (MQ=255) cgccTGCTTGAGGATCGACGGCAGCCACAGCACGAAGCCATACACGCCGGTGCTCCAGCAGAAGTACTGCAGCGCCAGGATGATCACTTGCGGCGAGCGGAACGCTTCGCGGTAGTTCTTTACAGGCTTGATAccc > 2:303634/1‑136 (MQ=255) ccGGCACCCACACCACGAAGCCAACCACGCCGGTGCTCCAGCAGAAGTACTGCAGCGCCAGGATGATCACTTGCGGCGAGCGGAACGCTTCGCGGTAGTTCTTTACAGGCTTGATACCCTGCTGCTCGGcagccag < 1:9439/135‑1 (MQ=255) aGCACGAAGCCATACACGCCGGTGCTCCAGCAGAAGTACTGCAGCGCCAGGATGATCACTTGCGGCGAGCGGAACGCTTCGCGGTAGTTCTTTACAGGCTTGATACCCTGCTGCTCGGCAGCCAGCGCCTGCGCCa < 1:303634/136‑1 (MQ=255) | CACCATTGCCAGCACCGCCGCCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGTTCGCCGCCTGCTTGAGGATCGACGGCAGCCACAGCACGAAGCCATACACGCCGATGCTCCAGCAGAAGTACTGCAGCGCCAGGATGATCACTTGCGGCGAGCGGAACGCTTCGCGGTAGTTCTTTACAGGCTTGATACCCTGCTGCTCGGCAGCCAGCGCCTGCGCCA > NC_002947/3824294‑3824529 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |