| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,041,460 | G→A | 19.0% | P117P (CCG→CCA) | PP_3560 → | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,041,460 | 0 | G | A | 19.0% | 42.4 / 4.3 | 21 | P117P (CCG→CCA) | PP_3560 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (12/5); new base A (2/2); total (14/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.74e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGCCGATGCCCTGGCCAGCGGCCCAAGCCTGCGCGGCCGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTCGATGCAGCGATCACCACCGAACCGGTCAGCCCTTACCCGCAGAACCTGGACTTCACACCGCT > NC_002947/4041343‑4041591 | ggCCGATGCCCTGGCCAGCGGCCCAAGCCTGCGCGGCCGCTTGCGCCTGGGGGCGATCCACACCGTGCTGGCCCGGCGTTTGCCCAAGGCGCTGGGGTGGATCAAGGCCCAACACCCGCACCGACACATCAGCGTg > 2:46427/1‑136 (MQ=255) gATGCCCTGGCCAGCGGCCCAAGCCTGCGCGGCCGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCt > 1:59186/1‑136 (MQ=255) cccTGGCCAGCGGCCCAAGCCTGCGCGGCCGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCATGGCCCATCACCCACAGCTACACATCAGCGTGGCCTgggg > 1:216602/1‑136 (MQ=255) cccTGGCCAGCGGCCCAAGCCTGCGCGGCCGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCggg > 1:263533/1‑136 (MQ=255) cccTGGCCAGCGGCCCAAGCCTGCGCGGCCGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCACAGCTACACATCACCGTGGCCTCggg > 1:218120/1‑136 (MQ=255) cccAAGCCTGCGCGGCCGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAg > 1:144314/1‑111 (MQ=255) cccAAGCCTGCGCGGCCGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAg < 2:144314/111‑1 (MQ=255) acacGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTCGATGCAGc < 1:44423/136‑1 (MQ=255) acacGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTCGATGCAGc > 2:187138/1‑136 (MQ=255) acacGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTCGATGCAGc > 1:78558/1‑136 (MQ=255) acacGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTCGATGCAGc > 1:236389/1‑136 (MQ=255) ggcgTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTCGATGCAGCGATCACCACCGAAcc > 1:106554/1‑136 (MQ=255) ggcgTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTCGATGCAGCGATCACCACCGAAcc < 2:263533/136‑1 (MQ=255) ggcgTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCACAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTCGATGCAGCGATCACCACCGAAcc < 2:216602/136‑1 (MQ=255) ggcgTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCACAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTCGATGCAGCGATCACCACCGAAcc < 2:218120/136‑1 (MQ=255) tttGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGAGCGTGGAAGACGGTGAGCTCGATGCAGCGATCACCACCGAACCggac > 1:253357/1‑134 (MQ=255) ccAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTCGATGCAGCGATCACCACCGAACCGGTCAGccc < 2:297982/136‑1 (MQ=255) cATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTCGATGCAGCGATCACCACCGAACCGGTCAGCCCTTACCCGCAGAACCTGGACTTCacac < 2:59186/136‑1 (MQ=255) aCCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTCGATGCAGCGATCACCACCGAACCGGTCAGCCCTTACCCGCAGAACCTGGACTTCACACCGcg > 1:3044/1‑135 (MQ=255) aCCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTCGATGCAGCGATCACCACCGAACCGGTCAGCCCTTACCCGCAGAACCTGGACTTCACACCGCt > 1:286804/1‑136 (MQ=255) aCCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTCGATGCAGCGATCACCACCGAACCGGTCAGCCCTTACCCGCAGAACCTGGACTTCACACCGCt > 1:176934/1‑136 (MQ=255) | GGCCGATGCCCTGGCCAGCGGCCCAAGCCTGCGCGGCCGCTTGCGCCTGGGGGCGATCCACACGGTGCTGGCGCGGCGTTTGCCCAAGGCGCTGGTGTGGATCAAGGCCCATCACCCGCAGCTACACATCAGCGTGGCCTCGGGCATGTCGGCGGAGCTGGCGCGGCGCGTGGAAGACGGTGAGCTCGATGCAGCGATCACCACCGAACCGGTCAGCCCTTACCCGCAGAACCTGGACTTCACACCGCT > NC_002947/4041343‑4041591 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |