Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,481,134 | C→A | 36.4% | P173P (CCC→CCA) | ybdR → | Zn‑dependent oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,481,134 | 0 | C | A | 36.4% | 1.1 / 7.7 | 11 | P173P (CCC→CCA) | ybdR | Zn‑dependent oxidoreductase |
Reads supporting (aligned to +/- strand): ref base C (5/2); new base A (2/2); total (7/4) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.76e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.15e-03 |
CAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGCACACCGTC > NC_002947/4481002‑4481257 | cAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCAcc > 1:169671/1‑136 (MQ=255) cATCTGTATGGAGGGATCCCTGGTGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCAATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCtt < 1:177170/136‑1 (MQ=255) cTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCAACCGCTTGGc > 1:46719/1‑120 (MQ=255) cTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCAACCGCTTGGc > 1:48077/1‑120 (MQ=255) cTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCAACCGCTTGGc < 2:46719/120‑1 (MQ=255) cTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCAACCGCTTGGc < 2:48077/120‑1 (MQ=255) gCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCg > 2:248529/1‑136 (MQ=255) aaaGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCt > 1:133245/1‑136 (MQ=255) gCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATgg < 2:169671/136‑1 (MQ=255) cGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGCACACCGTc > 1:232270/1‑136 (MQ=255) cGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGCACACCGTc > 1:91816/1‑136 (MQ=255) | CAGCCATCTGTATGGAGGGATCCCTGGAGGCCAAGCTGATTACGTTAGGGTGCCCAAAGGCAATGTCGGGCCATTCAAAGTCCCGACGACCCTCGCGGATGACAAAGTGCTGTTCCTATCCGACATCCTTCCCACCGCTTGGCAAGCGGTCATCAATGCCGAGATTGGCGAAGGCTCATCGGTAGCGATCTATGGCGCGGGGCCAGTGGGGCTGTTGAGTGCCGCCTGCGCACGGATGCTGGGCGCGCACACCGTC > NC_002947/4481002‑4481257 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |