| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,992,142 | G→C | 28.6% | P320P (CCC→CCG) | PP_4399 ← | glutamine synthetase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,992,142 | 0 | G | C | 28.6% | 21.4 / 7.1 | 14 | P320P (CCC→CCG) | PP_4399 | glutamine synthetase |
| Reads supporting (aligned to +/- strand): ref base G (5/5); new base C (2/2); total (7/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.44e-01 | |||||||||||
CGCGTGCAGCGTGCACGGCAGGCTCAGGTGCTCGGGCACTTCGAATTCGCCCTGGATGGCCGGCGATGGCTGCAAGCGCTGCTCGATGCCATGCAGCCCGGCGGCCAGGCTGGCTGCAATGGCCAGGTAGGGGTTGGCATCGGCGCCAGGCAGGCGGTTTTCCACCCGTCGCGCGACCGGCGCACTGGCCGGAATGCGCAAGCCAGCGGCGCGATTGTCCTCGGACCAGCACGCATTGTTCGGCGAGGCATAG > NC_002947/4992013‑4992265 | cgcgTGCAGCGTGCACGGCAGGCTCAGGTGCTCGGGCACTTCGAATTCGCCCTGGATGGCCGGCGATGGCTGCAAGCGCTGCTCGATGCCATGCAGCCCGGCGGCCAGGCTGGCTGCAATGGCCAGGTAGGGGTTg < 1:110459/136‑1 (MQ=255) gcgtgcagcgtgcaCGGCAGGCTCAGGTGCTCGGGCACTTCGAATTCGCCCTGGATGGCCGGCGATGGCTGCAAGCGCTGCTCGATGCCATGCAGCCCGGCGGCCAGGCTGGCAGCGATGGCCAGGTACGGGTTgg > 2:152265/1‑136 (MQ=255) gcgtgcagcgtgcaCGGCAGGCTCAGGTGCTCGGGCACTTCGAATTCGCCCTGGATGGCCGGCGATGGCTGCAAGCGCTGCTCGATGCCATGCAGCCCGGCGGCCAGGCTGGCAGCGATGGCCAGGTACGGGTTgg > 2:153770/1‑136 (MQ=255) gtgcagcgtgcaCGGCAGGCTCAGGTGCTCGGGCACTTCGAATTCGCCCTGGATGGCCGGCGATGGCTGCAAGCGCTGCTCGATGCCATGCAGCCCGGCGGCCAGGCTGGCTGCAATGGCCAGGTAGGGGTTGGCa > 1:17610/1‑136 (MQ=255) gcagcgtgcaCGGCAGGCTCAGGTGCTCGGGCACTTCGAATTCGCCCTGGATGGCCGGCGATGGCTGCAAGCGCTGCTCGATGCCATGCAGCCCGGCGGCCAGGCTGGCTGCAATGGCCAGGTAGGGGTTGGCATc > 2:290168/1‑136 (MQ=255) gcaCGGCAGGCTCAGGTGCTCGGGCACTTCGAATTCGCCCTGGATGGCCGGCGATGGCTGCAAGCGCTGCTCGATGCCATGCAGCCCGGCGGCCAGGCTGGCAGCGATGGCCAGGTACGGGTTGGCATCGGCGccc < 1:152265/136‑2 (MQ=255) gcaCGGCAGGCTCAGGTGCTCGGGCACTTCGAATTCGCCCTGGATGGCCGGCGATGGCTGCAAGCGCTGCTCGATGCCATGCAGCCCGGCGGCCAGGCTGGCAGCGATGGCCAGGTACGGGTTGGCATCGGCGccc < 1:153770/136‑2 (MQ=255) gCACTTCGAATTCGCCCTGGATGGCCGGCGATGGCTGCAAGCGCTGCTCGATGCCATGCAGCCCGGCGGCCAGGCTGGCTGCAATGGCCAGGTAGGGGTTGGCATCGGCGCCAGGCAGGCGGTTTTCCACCCGTcg > 1:176776/1‑136 (MQ=255) cACTTCGAATTCGCCCTGGATGGCCGGCGATGGCTGCAAGCGCTGCTCGATGCCATGCAGCCCGGCGGCCAGGCTGGCTGCAATGGCCAGGTAGGGGTTGGCATCGGCGCCAGGCAGGCGGTTTTCCACCCGTcgc > 1:535/1‑136 (MQ=255) ttCGCCCTGGATGGCCGGCGATGGCTGCAAGCGCTGCTCGATGCCATGCAGCCCGGCGGCCAGGCTGGCTGCAATGGCCAGGTAGGGGTTGGCATCGGCGCCAGGCAGGCGGTTTTCCACCCGTCGCGCGACCGgc < 1:222126/136‑1 (MQ=255) ttCGCCCTGGATGGCCGGCGATGGCTGCAAGCGCTGCTCGATGCCATGCAGCCCGGCGGCCAGGCTGGCTGCAATGGCCAGGTAGGGGTTGGCATCGGCGCCAGGCAGGCGGTTTTCCACCCGTCGCGCGACCGgc < 1:53317/136‑1 (MQ=255) ggCCGGCGATGGCTGCAAGCGCTGCTCGATGCCATGCAGCCCGGCGGCCAGGCTGGCTGCAATGGCCAGGTAGGGGTTGGCATCGGCGCCAGGCAGGCGGTTTTCCACCCGTCGCGCGACCGGCGCACTGGCCGGa < 2:17610/136‑1 (MQ=255) tGCCATGCAGCCCGGCGGCCAGGCTGGCTGCAATGGCCAGGTAGGGGTTGGCATCGGCGCCAGGCAGGCGGTTTTCCACCCGTCGCGCGACCGGCGCACTGGCCGGAATGCGCAAGCCAGCGGCGCGATTGTCCTc < 2:195600/136‑1 (MQ=255) aaTGGCCAGGTAGGGGTTGGCATCGGCGCCAGGCAGGCGGTTTTCCACCCGTCGCGCGACCGGCGCACTGGCCGGAATGCGCAAGCCAGCGGCGCGATTGTCCTCGGACCAGCACGCATTGTTCGGCGAGGCATAg > 1:132986/1‑136 (MQ=255) | CGCGTGCAGCGTGCACGGCAGGCTCAGGTGCTCGGGCACTTCGAATTCGCCCTGGATGGCCGGCGATGGCTGCAAGCGCTGCTCGATGCCATGCAGCCCGGCGGCCAGGCTGGCTGCAATGGCCAGGTAGGGGTTGGCATCGGCGCCAGGCAGGCGGTTTTCCACCCGTCGCGCGACCGGCGCACTGGCCGGAATGCGCAAGCCAGCGGCGCGATTGTCCTCGGACCAGCACGCATTGTTCGGCGAGGCATAG > NC_002947/4992013‑4992265 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |