| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,108,258 | C→A | 28.6% | L608L (CTG→CTT) | ydiJ ← | putative oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,108,258 | 0 | C | A | 28.6% | 22.5 / 7.0 | 14 | L608L (CTG→CTT) | ydiJ | putative oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base C (3/7); new base A (2/2); total (5/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.80e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.44e-01 | |||||||||||
CTGGCCCTGGTTGCGCGCACGGTTGTTGCGCAGACGCGCCGGCAGGCCCTTGAGCCACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGA > NC_002947/5108129‑5108382 | cTGGCCCTGGTTGCGCGCACGGTTGTTGCGCAGACGCGCCGGCAGGCCCTTGAGCCACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAg < 2:214178/136‑1 (MQ=255) aCGCGCCGGCAGGCCCTTGAGCCACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATAAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCgg > 1:113080/1‑136 (MQ=255) aCGCGCCGGCAGGCCCTTGAGCCACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATAAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCgg > 1:77799/1‑136 (MQ=255) cgcCGGCAGGCCCTTGAGCCACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTg > 2:268379/1‑136 (MQ=255) aGCCACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGc < 1:287488/136‑1 (MQ=255) aGCCACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGc < 1:31436/136‑1 (MQ=255) cacCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGcg > 1:169245/1‑136 (MQ=255) cacCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCATGGGCGAATGCTGGCGTTCGCGGGTGGCCATCCACGACGGGCACATGGcg > 1:139869/1‑136 (MQ=255) acCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGcgt < 1:117206/136‑1 (MQ=255) tCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGgcgc < 1:117506/136‑1 (MQ=255) cAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACg < 1:117588/136‑1 (MQ=255) cAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACg < 1:27866/136‑1 (MQ=255) cACTCGCGCATAAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGa < 2:113080/136‑1 (MQ=255) cACTCGCGCATAAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGa < 2:77799/136‑1 (MQ=255) | CTGGCCCTGGTTGCGCGCACGGTTGTTGCGCAGACGCGCCGGCAGGCCCTTGAGCCACGACACCTTGTTGCGCGCCGCAGCCAGCACATCGATGTTCGCCTCGCCCTGCAGGCGCAGCCACTCGCGCATCAGCGAGGCGCGCCCCTTGGGCGAATGCTGGCGTTCGCGGGTGGCCTTCCACGACGGGCACATGGCGTCGTTGGGGTCATAGTTGTAACAGGCGCCATTGCCGTTGCAGTGCACGGCGCTGGGGA > NC_002947/5108129‑5108382 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |