| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,687,468 | T→C | 17.4% | Q468R (CAG→CGG) | PP_4988 ← | signal transduction histidine kinase CheA/CheY‑like receiver |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,687,468 | 0 | T | C | 17.4% | 45.8 / 5.6 | 23 | Q468R (CAG→CGG) | PP_4988 | signal transduction histidine kinase CheA/CheY‑like receiver |
| Reads supporting (aligned to +/- strand): ref base T (11/8); new base C (2/2); total (13/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.08e-01 | |||||||||||
CGGTTCAGCAGGTGCTCGGCGCCCCAGGCCAGTTCAGCCACCGCCTCGGCATGGACCATGCGGCCGCTGCCTTTGAGTGTATGCAGCGCGCGACGCACTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATCGCCATTGCC > NC_002947/5687348‑5687577 | cGGTTCAGCAGGTGCTCGGCGCCCCAGGCCAGTTCAGCCACCGCCTCGGCATGGACCATGCGGCCGCTGCCTTTGAGTGTATGCAGCGCGCGACGCACTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGcc < 2:188880/136‑1 (MQ=255) ggTTCAGCAGGTGCTCGGCGCCCCAGGCCAGTTCAGCCACCGCCTCGGCATGGACCATGCGGCCGCTGCCTTTGAGTGTATGCAGCGCGCGACGCACTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCa > 2:26314/1‑136 (MQ=255) agGTGCTCGGCGCCCCAGGCCAGTTCAGCCACCGCCTCGGCATGGACCATGCGGCCGCTGCCTTTGAGTGTATGCAGCGCGCGCCGCACTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCgccgcc > 2:234845/1‑136 (MQ=255) ccGCCTCGGCATGGACCATGCGGCCGCTGCCTTTGAGTGTATGCAGCGCGCGACGCACTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTcgcc > 1:16262/1‑136 (MQ=255) tGGACCATGCGGCCGCTGCCTTTGAGTGTATGCAGCGCGCGACGCACTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCaa < 2:246082/136‑1 (MQ=255) aCCATGCGGCCGCTGCCTTTGAGTGTATGCAGCGCGCGACGCACTTCACCCAGTGCCTCGCGCTGCCGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGa < 1:292597/136‑1 (MQ=255) ccATGCGGCCGCTGCCTTTGAGTGTATGCAGCGCGCGACGCACTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGaa < 1:26314/136‑1 (MQ=255) cGGCCGCTGCCTTTGAGTGTATGCAGCGCGCGCCGCACTTCCCCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCCGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGGCAAGGAACACtt > 1:296548/1‑136 (MQ=255) cGGCCGCTGCCTTTGAGTGTATGCAGCGCGCGACGCACTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACtt > 1:18512/1‑136 (MQ=255) ggCCGCTGCCTTTGAGTGTATGCAGCGCCCGACGCACTTGACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCACGTCAAGGAacacatt > 2:225929/1‑133 (MQ=255) cTGCCTTTGAGTGTATGCAGCGCGCGACGCACTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGaa > 2:73235/1‑136 (MQ=255) cTGCCTTTGAGTGTATGCAGCGCGCGACGCACTTCACCCAGTGCCTCGCGCTGCCGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGa < 1:291237/124‑1 (MQ=255) cTGCCTTTGAGTGTATGCAGCGCGCGACGCACTTCACCCAGTGCCTCGCGCTGCCGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGa > 2:291237/1‑124 (MQ=255) cTGCCTTTGAGTGTATGCAGCGCGCGACGCACTTCACCCAGTGACTCCCGCTGCCGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGAATTCCGGCAGCAGTTAGCCCGCCTAGTCAAGGAACACTTGGCGaa > 2:292597/1‑136 (MQ=255) gCAGCGCGCGACGCACTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGcc > 2:223876/1‑136 (MQ=255) gcgACGCACTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCTGCAGTTCGCCCGCCTCGTCAAGGATCACTTGGCGAAGCTCATCATCGATGCCATCGCCa < 1:255424/136‑1 (MQ=255) gcgACGCACTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATCGCCa < 1:225929/136‑1 (MQ=255) cgACGCACTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACCCTTGGCGAAGCTCATCATCGATGCCCTCGCCAt > 2:182678/1‑136 (MQ=255) cgACGCACTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGAt < 2:104906/125‑1 (MQ=255) cgACGCACTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGAt > 1:104906/1‑125 (MQ=255) gCACTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATCGCCATTGcc < 2:5179/136‑1 (MQ=255) ccTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGc < 2:179076/95‑1 (MQ=255) ccTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGc > 1:179076/1‑95 (MQ=255) tgGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGc < 1:72153/97‑1 (MQ=255) tgGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGc > 2:72153/1‑97 (MQ=255) | CGGTTCAGCAGGTGCTCGGCGCCCCAGGCCAGTTCAGCCACCGCCTCGGCATGGACCATGCGGCCGCTGCCTTTGAGTGTATGCAGCGCGCGACGCACTTCACCCAGTGCCTCGCGCTGCTGGTTGTCGGCACGCCAGCGCAGCCAGTGGCGCTCGATTTCCGGCAGCAGTTCGCCCGCCTCGTCAAGGAACACTTGGCGAAGCTCATCATCGATGCCATCGCCATTGCC > NC_002947/5687348‑5687577 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |