| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,484,303 | T→G | 100% | V125G (GTC→GGC) | yhdX → | amino acid ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,484,303 | 0 | T | G | 100.0% | 39.8 / NA | 12 | V125G (GTC→GGC) | yhdX | amino acid ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (4/8); total (4/8) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GTCATCGGCCTGCTCAATACGCTGTTGGTGACCTTCATCGGCGTCATTCTGGCGACGATACTGGGCTTCATCATCGGTGTGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGTCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTCGCCGTGTTCCTGACCCTGCCGGGACCGCGGGGCAGCATCAACATCGAGG > NC_002947/1484179‑1484410 | gTCATCGGCCTGCTCAATACGCTGTTGGTGACCTTCATCGGCGTCATTCTGGCGACGATACTGGGCTTCATCATCGGTGTGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGGCTATGTGGaaa > 2:214660/1‑136 (MQ=255) aaTACGCTGTTGGTGACCTTCATCGGCGTCATTCTGGCGACGATACTGGGCTTCATCATCGGTGTGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTc < 1:214660/136‑1 (MQ=255) cGCTGTTGGTGACCTTCATCGGCGTCATTCTGGCGACGATACTGGGCTTCATCATCGGTGTGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTccgcc < 2:14499/136‑1 (MQ=255) tGACCTTCATCGGCGTCATTCTGGCGACGATACTGGGCTTCATCATCGGTGTGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCa > 1:277038/1‑136 (MQ=255) tCTGGCGACGATACTGGGCTTCATCATCGGTGTGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTc < 1:65095/136‑1 (MQ=255) tCTGGCGACGATACTGGGCTTCATCATCGGTGTGGCTCGCCTGGCACCGAACTGGATGATCAACAAGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTc < 2:258670/136‑1 (MQ=255) tACTGGGCTTCATCATCGGTGTGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTCGCCGTGTTCCt < 2:232206/136‑1 (MQ=255) tACTGGGCTTCATCATCGGTGTGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTCGCCGTGTTCCt < 2:46156/136‑1 (MQ=255) catcGGTGTGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTAGCCGTGTTCCTGACCCTGCCGGGa > 1:177084/1‑136 (MQ=255) gTCACCGAACTGGATGATCAACAAGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTCGCCGTGTTCCTGACCCTGCCGGGACCGCGGGGCAGCATCAAc > 2:217540/1‑136 (MQ=255) aaCTGGATGATCAACAAGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTCGCCGTGTTCCTGACCCTGCCGGGACCGCGGGGCAGCATCAACATCGAgg < 2:177084/136‑1 (MQ=255) aaCTGGATGATCAACAAGCTGGCGACCGGCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTCGCCGTGTTCCTGACCCTGCCGGGACCGCGGGGCAGCATCAACATCGAgg < 2:277038/136‑1 (MQ=255) | GTCATCGGCCTGCTCAATACGCTGTTGGTGACCTTCATCGGCGTCATTCTGGCGACGATACTGGGCTTCATCATCGGTGTGGCTCGCCTGTCACCGAACTGGATGATCAACAAGCTGGCGACCGTCTATGTGGAAACCTTCCGCAACATTCCGCCGTTGTTGCAGATCCTGTTCTGGTATTTCGCCGTGTTCCTGACCCTGCCGGGACCGCGGGGCAGCATCAACATCGAGG > NC_002947/1484179‑1484410 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |