| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2872669 | 74 (0.410) | 39 (0.220) | 6/258 | 4.1 | 31.8% | intergenic (+11/‑519) | PP_2522/PP_2524 | transposase/HD domain‑containing protein |
| ? | NC_002947 | 4024607 = | 95 (0.530) | intergenic (‑336/+332) | PP_3547/emrB | NAD(P)‑binding oxidoreductase/multidrug transporter permease | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
AGGTTGCGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2872534‑2872669‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGG > NC_002947/4024607‑4024739 AGGTTGCGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCC > 2:4312445/1‑136AGGTTGCGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCC > 2:2850840/1‑136 GGTTGCGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCC > 1:4243576/1‑136 TGCGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTA < 1:3628803/136‑1 GCGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTAC > 1:1741444/1‑136 GCGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTAC > 2:3265865/1‑136 GCGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTAC > 1:167664/1‑136 GCGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTAC > 1:4555043/1‑136 CGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACG > 2:1591196/1‑136 CGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACG > 2:717218/1‑136 CGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACG > 2:66555/1‑136 CGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACG > 2:4298785/1‑136 CGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACG > 2:4149386/1‑136 CGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACG > 2:3406426/1‑136 CGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACG > 1:359821/1‑136 CGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACG > 1:3853308/1‑136 CGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACG > 1:4008436/1‑136 CGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTAACG > 2:4535242/1‑136 AAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGC > 2:3481973/1‑136 AAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTAGACGGAAAGGGTCAAAAAAGCCGCCAAAAACAAAAGACCATGAAAGGGATGGCCCATAAGGC > 2:4438649/1‑136 AAAGCCCACGAGTCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCG < 2:1758496/136‑1 AAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCG < 1:3598839/136‑1 AAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCG < 2:2984573/136‑1 AAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGGCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCG < 2:1198216/136‑1 AAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCAGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCG < 2:3893079/136‑1 AAACCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCG < 1:2848583/136‑1 AGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCg > 1:802066/1‑125 AGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCg < 2:802066/126‑2 GCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGA > 1:2679261/1‑136 AAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCGGGTCCCTTTTT > 1:890719/1‑121 AAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCGGGTCCCTTTTT < 2:890719/121‑1 GTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAAC > 1:369024/1‑136 tTGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCCATCATCCGG < 1:695173/135‑1 GCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCCATCATCCGGCC > 1:3344921/1‑136 ACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCCATCATCCGGCCCCTGCGCTACGC < 2:3344921/136‑1 GGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCCATCATCCGGCCCCTGCGCTACGCTCCGGGGT < 2:369024/136‑1 GGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCCATCATCCGGCCCCTGCGCTACGCTCCGGGGT < 2:2679261/136‑1 GGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCCATCATCCGGCCCCTGCGCTACGCTCCGGGGT < 1:726927/136‑1 TCAGCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAACACGCTGGCTCCCATCATCCGGCCCCTGCGCTACGCTCCGGGGTTC < 1:4215163/136‑1 CTTGAAAGGGATGGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGC > 2:4681596/1‑68 CTTGAAAGGGATGGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGC < 1:4681596/68‑1 AAAGGGATGGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAA < 2:3055527/57‑1 AAAGGGATGGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAA > 1:3055527/1‑57 GCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGG < 2:1696255/136‑1 GCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGG < 2:1235662/136‑1 AGGTTGCGAAAAGCCCACGAGGCCCCAAGGTGCTCAAAGCTAAGGCCTGGGTGCAAGGGACGGCTGTACATGCTCATGTTTCGACGGATCGGGTCATCAAAGCCGCCAAAACCAAAAGACCTTGAAAGGGATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2872534‑2872669‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGGCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGG > NC_002947/4024607‑4024739 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |