| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,383,258 | 0 | A | C | 62.5% | ‑3.3 / 10.4 | 17 | C17G (TGC→GGC) | PP_1204 | lipoprotein |
| Reads supporting (aligned to +/- strand): ref base A (1/5); new base C (10/0); total (12/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.37e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.57e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCGCCCCCAAGGGTAAAGGTACTTCGC‑TTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCT > NC_002947/1383135‑1383385 | tCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGTGcc < 1:924379/136‑1 (MQ=255) ggCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGGGCGCCGCAGGGCGGCGCCCCCacgcg > 2:1232308/1‑132 (MQ=255) gCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGGGGCGCCCCGGGGGGCGccccccacggg > 2:361298/1‑130 (MQ=255) gCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGGGCCGCCCCCGGGGGCGcccccccccgg > 1:3589585/1‑130 (MQ=255) gCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGGGCCGCCCAGGGGGGCGccccccacggg > 2:71767/1‑130 (MQ=255) gCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGGGCCGCCCACTGCGGCGcccccccaggg > 2:1785599/1‑130 (MQ=255) gCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGGGCCCCCCACAACGGGGccccccaccgg > 2:1740232/1‑130 (MQ=255) gCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGGCCCCCCCACCGCGGCGcccccccccgg > 2:1664033/1‑130 (MQ=255) gACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGGGCCCCCCCCCGGGGCGGCCCCCACGGGAAAGGtt > 1:4409801/1‑135 (MQ=255) aCATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGGGGGGCCCCGTGGGGCGCCCCCCACGGGAAAgggaa > 2:4597040/1‑133 (MQ=255) taTCTCCAGGGTATGCTCGAGCAGTTTGGGCTCGACGCGCTCCTCTTGGTCGCTGCGCTGGGACATCTGGGTGCCGCAGCGGCTGACCTGCAGGGCCCCGCACTGTGCGGCGCCCCCAAGGGTAAAGGTACTTCGc < 2:1753951/135‑1 (MQ=255) cgctgcgctgGGACATCTGTTGGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCGCCCCCAAGGGTAAAGGTACTTCGC‑TTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGc < 2:2905202/136‑1 (MQ=255) tgcgctgGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTTCGGCGCCCCCAAGGGTAAAGGTACTTCGC‑TTGTACATGATCACTCGTGCATTGGt < 2:4288326/109‑1 (MQ=255) tgcgctgGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTTCGGCGCCCCCAAGGGTAAAGGTACTTCGC‑TTGTACATGATCACTCGTGCATTGGt > 1:4288326/1‑109 (MQ=255) cgctgGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGGGCCGCCCCCAGCGGCGCCCCCCACCGGAAAAGTTCTTAGCGTGGTAAAT‑ATTAATAGTGGATTGGTTATTATCGGCGGACGCCGGGCGGCAGGaa > 2:4377032/1‑136 (MQ=255) aGCCGCTGACGAGCAGGGGGCCGCCCAGTGGGGGGCCCCCCACGGGTAAGGTTATTAGC‑GTGTTGATGATGACACGGGGATTGGGTTTAAGCGGCGGACGCGGGGCGGCAGGAAGGTCAGCACATCATTTAGCGGc > 2:3566441/1‑136 (MQ=255) gccgccccACCGGGCGGCCCCCCCAAGGGTAAAGGTACTTCGC‑TTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCt < 2:3244440/134‑1 (MQ=255) | TCACCTTCGGCTCGCCGACATCGATCTGCAGGGTATGCTCGAGCAGTTTGCGCTCGACGCGCTCCTCATGGTCGCTGCGCTGGGACATCTGGTTGGCGCAGCCGCTGACGAGCAGGGCGCCGCACAGTGCGGCGCCCCCAAGGGTAAAGGTACTTCGC‑TTGTACATGATCACTCGTGCATTGGTTATCAGCGGCGAACGCGGGCCTGCAGGAAGGTCAGCACTTCATTGAGCGGCAACGCCTGGGCGTCCT > NC_002947/1383135‑1383385 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |