| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,707,335 | Δ1 bp | 5.9% | intergenic (+111/+31) | PP_1501 → / ← PP_1502 | hypothetical protein/OmpA family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,707,335 | 0 | T | . | 5.9% | 452.9 / 21.0 | 135 | intergenic (+111/+31) | PP_1501/PP_1502 | hypothetical protein/OmpA family protein |
| Reads supporting (aligned to +/- strand): ref base T (61/65); new base . (5/3); total (67/68) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.89e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.26e-01 | |||||||||||
Only 100 of 137 total aligned reads displayed.
CATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAGTTGCTCGAGTTGTCCGCTACCGGGT > NC_002947/1707191‑1707484 | cATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCgg < 1:166438/150‑1 (MQ=255) aTGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCggg > 2:2531613/1‑150 (MQ=255) tGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCgggg < 1:1011615/150‑1 (MQ=255) tGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCgggg < 1:1761502/150‑1 (MQ=255) gggCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCggggg > 2:661885/1‑149 (MQ=255) gCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCtt < 1:3244980/150‑1 (MQ=255) gAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCgtgt > 2:2568223/1‑150 (MQ=255) gAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGt < 2:5091761/150‑1 (MQ=255) gAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTGGt > 2:5114056/1‑150 (MQ=255) aGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGATCGA‑CGCGGGGCTTTTc < 1:1496607/150‑1 (MQ=255) ggAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTcc < 1:382346/150‑1 (MQ=255) gAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCt < 2:1400482/150‑1 (MQ=255) aaaCACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCGATCGA‑CGCGGGGCTTTTCttt < 2:4391503/150‑1 (MQ=38) aaaCACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCtt > 2:363789/1‑150 (MQ=255) acacCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTc < 2:1721271/150‑1 (MQ=255) acacCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTc < 2:1721238/150‑1 (MQ=255) cacCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCa < 2:4636897/150‑1 (MQ=255) acCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAg < 1:4311101/150‑1 (MQ=255) acCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAg < 2:217778/150‑1 (MQ=255) acCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAg > 2:4969089/1‑150 (MQ=255) gcgGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTa < 1:3569541/150‑1 (MQ=255) ggTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCACCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTagccagc < 2:2026309/150‑1 (MQ=255) cAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTa < 2:3012372/150‑1 (MQ=255) cAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTa < 2:1789205/150‑1 (MQ=255) cAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTa < 2:1789158/150‑1 (MQ=255) gTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAgc < 1:153398/150‑1 (MQ=255) gTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAgc > 1:2202563/1‑150 (MQ=255) tGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAgcg > 1:3208925/1‑150 (MQ=255) ggTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTg < 1:3575860/150‑1 (MQ=255) tttCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGaa > 1:558443/1‑150 (MQ=255) tttCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGaa > 1:558261/1‑150 (MQ=255) tttCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGaa > 1:2038396/1‑150 (MQ=255) tCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCGTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAAcc > 1:958780/1‑150 (MQ=255) gcgcAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTgg < 2:4059272/150‑1 (MQ=255) gcaTTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCAc < 2:2963444/150‑1 (MQ=255) aTTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTAGCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCGTGTCCTTTCAGCTAGCCAGCCTTGGCGCTGTACCTGGCTCACCg > 2:4481962/1‑150 (MQ=255) tttttGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGa > 1:694926/1‑150 (MQ=255) tttttGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGa < 2:3470927/150‑1 (MQ=255) tttGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGc < 1:2398059/150‑1 (MQ=255) tGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTCGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCgt > 1:2828611/1‑150 (MQ=255) cgcCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCGCGGGCGGCACCACAGTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGAGCGCGGGGCGTGTCCTTTCAGCTAGCCAGCCTAAGCGCTGAACCTGGCTCACCGAGCgtggt > 2:2337535/1‑150 (MQ=37) cgcCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCGCGGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCGTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCgtggt > 2:2337387/1‑150 (MQ=38) gcgAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAATAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCAc > 1:2293937/1‑150 (MQ=255) gcgAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAATAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCAc > 1:2293962/1‑150 (MQ=255) gagaTCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCg > 2:245412/1‑150 (MQ=255) agaTCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCgg > 2:3692870/1‑150 (MQ=255) agaTCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCgg > 1:1808561/1‑150 (MQ=255) tCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTTTct < 1:1840712/92‑2 (MQ=255) tCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTTTct > 2:1840712/1‑91 (MQ=255) tCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTg < 1:4526967/150‑1 (MQ=255) tCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTTTct < 2:1199865/92‑2 (MQ=37) tCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTg > 1:4289140/1‑150 (MQ=255) tCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTg > 2:4430922/1‑150 (MQ=255) gAGCGCCGCCCGCGCGGCGCTCGATCTCGCGGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGt > 1:143066/1‑150 (MQ=255) aGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGtt < 2:2859970/150‑1 (MQ=255) aGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGtt < 1:3724018/150‑1 (MQ=255) aGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGtt < 2:2202563/150‑1 (MQ=255) gccgcGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTc < 2:2510277/150‑1 (MQ=255) ccgcccgcGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCg < 2:3155243/150‑1 (MQ=255) cgcgcgGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGt > 1:3527091/1‑150 (MQ=255) cgcgGGCGGCGCTCGATCTCACTGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCGAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTg < 1:1149672/150‑1 (MQ=255) cgcgGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTg < 2:152529/150‑1 (MQ=255) gcgggcggCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTgg < 1:3722452/150‑1 (MQ=255) ggcggcGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGgaga < 1:4554389/150‑1 (MQ=255) gcggcgCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGAt > 2:2124981/1‑150 (MQ=255) cgcTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTc < 2:3087939/150‑1 (MQ=255) tCGATCTCACAGGCGGCACAACAGTATCGGCGAACAAAGACCAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCGGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCAcc < 2:3514045/150‑1 (MQ=255) gATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTc > 2:184859/1‑150 (MQ=255) tcACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCAcc > 2:1883539/1‑150 (MQ=255) acaGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCg > 2:813724/1‑150 (MQ=255) acaGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCg > 1:1137573/1‑150 (MQ=255) ggcggcACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCTAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACg < 1:4426691/150‑1 (MQ=255) gcggcACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACgg > 2:1361747/1‑150 (MQ=255) ggcACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGtt > 1:3450281/1‑150 (MQ=255) gcACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTc > 1:3067971/1‑150 (MQ=255) acaacaTTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTg > 2:396165/1‑150 (MQ=255) tATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGa < 1:4502488/72‑1 (MQ=255) tATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGa > 2:4502488/1‑72 (MQ=255) tCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTcc > 2:3126457/1‑150 (MQ=255) gCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGa < 2:3514010/150‑1 (MQ=255) gCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGa > 2:5003351/1‑150 (MQ=255) cGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAg < 1:1664900/150‑1 (MQ=255) aCAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAGTTg > 2:5083379/1‑150 (MQ=255) aaaggacaaGCCCCGCGATCGA‑CGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAGTTGc > 2:2422420/8‑150 (MQ=255) aaaGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCGGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAGTTGCt > 1:3992583/1‑150 (MQ=255) aaaGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAGTTGCt > 2:2276558/1‑150 (MQ=255) aaaGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAGTTGCt > 1:2956150/1‑150 (MQ=255) aggacaaGCCCCGCGATCGA‑CGCGGGGCTT‑TTCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAGTTGCTCg > 2:3462277/6‑150 (MQ=38) aaGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAGTTGCTc < 2:760687/150‑1 (MQ=255) aaGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAGTTGCTc < 2:3331399/150‑1 (MQ=255) gAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCGGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAGTTGCTCGa > 1:1698400/1‑150 (MQ=255) aaaGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAGTTGCTCGAGt < 2:2015208/150‑1 (MQ=255) aaaGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAGTTGCTCGAGt > 1:1763015/1‑150 (MQ=255) aaaGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAGTTGCTCGAGt > 1:950342/1‑150 (MQ=255) aaGCCCCGCGATCGA‑CGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAGTTGCTCGAGtt > 1:3324878/1‑150 (MQ=255) aaGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAGTTGCTCGAGtt < 1:4398621/150‑1 (MQ=255) gCCCCGCGATCGA‑CGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAGTTGCTCGAGTTGt > 2:3961502/1‑150 (MQ=255) ccGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAGTTGCTCGAGTTGTCCg > 2:3548216/1‑150 (MQ=255) gcg‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAGTTGCTCGAGTTGTCCGCt > 1:2502675/1‑150 (MQ=255) ctCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCGGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCGGCGCACGTCCCGAGTTGCTCGAGTTGTCCGCTACCggg < 1:3352547/149‑1 (MQ=255) | CATGGGCGAGGAAACACCGCGGCAGGTGCAGTGAGGTTTCGGCGCAGCATTTTTGGCGCCCGCGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGGCACAACATTATCGGCGAACAAAGAAAAGCCCCGCG‑TCGATCGCGGGGCTTGTCCTTTCAGCTAGCCAGCCTTAGCGCTGAACCTGGCTCACCGAGCGTGGTGCCACCGGCTGGTTGTCGTTGGAGATGGTCACCTCCACCCGACGGTTCTGCGCACGTCCCGAGTTGCTCGAGTTGTCCGCTACCGGGT > NC_002947/1707191‑1707484 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |