| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1025270 = | 52 (0.340) | 10 (0.080) | 7/222 | NT | 18.6% | intergenic (‑121/+108) | opdP/dppA‑II | glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein |
| ? | NC_002947 | 1025363 = | 46 (0.380) | intergenic (‑214/+15) | opdP/dppA‑II | glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein | |||||
TCAAGGTTTCCCAGTTCAAGGTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1025445‑1025270‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgggcttgcccgcgaagaggccGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTGCTTGAGCCGCT > NC_002947/1025363‑1025511 TCAAGGTTTCCCAGTTCAAGGTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAG < 2:54933/150‑1TCAAGGTTTCCCAGTTCAAGGTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCCCTCCCACAGGATATCGACAGGTTCGGACACTGCGCCCGACCGGAG > 2:1848142/1‑150 CAAGGTTTCCCAGTTCAAGGTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGG < 2:1665464/150‑1 CAAGGTTTCCCAGTTCAAGGTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGG < 1:2132503/150‑1 CAAGGTTTCCCAGTTCAAGGTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGG < 1:2191903/150‑1 CAAGGTTTCCCAGTTCAAGGTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGG < 1:3702976/150‑1 CAAGGTTTCCCAGTTCAAGGTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGG < 1:3576272/150‑1 AAGGTTTCCCAGTTCAAGGTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCACCCACACGATATAGACAGGTTCGGACACAGCGCCCAAACAGAGGG > 1:1643598/1‑150 GTTTCCCAGTTCAAGGTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGC < 1:114456/150‑1 TTCCCAGTTCAAGGTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGG < 1:1213169/150‑1 TTCCCAGTTCAAGGTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGG < 2:404836/150‑1 TTCCCAGTTCAAGGTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGG < 1:752549/150‑1 TTCCCAGTTCAAGGTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCCCGCCCCCACGCTCTCGACAGGTTCGGACACAGCGCCCGACCAGAGGGGGCGG > 1:3677621/1‑150 TCCCAGTTCAAGGTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGGGATCCCGCTGCCACAGGATGTGGACAGGTTGGGTCAAAGCGCCCGACCTGTGGGGGCGGG > 2:895009/1‑150 CCCAGTTCAAGGTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGC < 2:1026634/150‑1 CCCAGTTCAAGGTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGC < 2:3206361/150‑1 CCCAGTTCAAGGTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGC < 2:3052329/150‑1 tgAAGGTCAGCCCGTTTGGGCGCTATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACGTGAGGGAGCGGGCTTGCCC < 2:3602707/148‑1 GTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTTATTAAGCGTTAGCCAGTACCGGCCTCTCCGCGGGCACGCCCGCTCCCACAGGATCCCGACCGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAA < 2:3567680/150‑1 CAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGA < 2:3301166/150‑1 GCCGGTTTGGGCGCAATGATTTTTCGGGTGTGAGTGTTGATTAAGCGTTTGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGCCCGGTTCGGACACTGCGCCCAACCTGAGGGAGCGGGCTTGCCCGCGAAGAGG < 2:1948605/150‑1 CCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCC > 2:2457939/1‑150 AAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTG > 2:3776656/1‑150 GCCCGCTCCCACAGGATCTCGTCAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGG > 1:106717/1‑150 CCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGA > 2:549817/1‑150 CCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGA > 1:3859742/1‑150 CCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGA > 2:3928988/1‑150 CCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCAGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAA > 1:1287703/1‑150 GCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAAC > 2:1672339/1‑150 GCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGATTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAAC > 1:3632823/1‑150 TCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCT > 2:3713401/1‑150 GTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCT > 1:837499/1‑150 CTGGGGGCGGGGGCTGGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCG < 1:1572776/150‑1 AGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAAT < 2:837499/150‑1 AGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAAT < 2:372916/150‑1 AGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAAT < 2:372888/150‑1 TTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACC > 1:2502615/1‑150 CCCGCTAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGC < 1:3504334/150‑1 CCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCT > 1:1861000/1‑150 CCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCT > 1:2928923/1‑150 CCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCT < 1:4892196/150‑1 CCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCT < 1:5121715/150‑1 CCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCT > 1:168651/1‑150 CGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTG > 1:517626/1‑150 GCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTGC > 2:3175986/1‑150 GCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTGC < 2:4384612/150‑1 GAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCGCGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTGCTT > 1:3557938/1‑150 GAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTGCTT > 2:1626327/1‑150 GAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTGCTT > 2:1626558/1‑150 GAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTGCTT > 2:2721627/1‑150 GAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTAACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTGCTT > 2:2721634/1‑150 GCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTGCTTGAGCCG > 2:678952/1‑150 CGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCGCGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTGCTTGAGCCGCT < 2:3557938/150‑1 TCAAGGTTTCCCAGTTCAAGGTCAGCCCGTTTGGGCGCAATGATTTTTCCGGTGTGAGTGTTGATTAAGCGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1025445‑1025270‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgggcttgcccgcgaagaggccGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTGCTTGAGCCGCT > NC_002947/1025363‑1025511 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |