New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1811457 =	82 (0.540)	6 (0.050)	3/230	NT	8.4%	intergenic (+22/+106)	ispD/PP_1615	2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator
	?	NC_002947	1811537 =	63 (0.500)					intergenic (+102/+26)	ispD/PP_1615	2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator

GTACGGCGGCTGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1811628‑1811457 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCG  >  NC_002947/1811537‑1811684                                                                                                                                                                                                                                                                                                                                  GTACGGCGGCTGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTG                                                                                                                                                                            <  1:4847826/150‑1   ACGGCGGCTGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTA                                                                                                                                                                          <  1:3268203/150‑1    CGGCGGCTGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAG                                                                                                                                                                         <  2:1958182/150‑1    CGGCGGCTGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAG                                                                                                                                                                         <  1:1887638/150‑1    CGGCGGCTGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAG                                                                                                                                                                         <  2:3825556/150‑1       CGGCTGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAG                                                                                                                                                                      <  1:139408/150‑1       CGGCTGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAG                                                                                                                                                                      <  1:139406/150‑1          CTGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGG                                                                                                                                                                   <  1:2420238/150‑1          CTGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGG                                                                                                                                                                   <  2:4766281/150‑1          CTGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGG                                                                                                                                                                   <  1:3899586/150‑1          CTGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGGCCAACCACCGATGCAATCCCTTGTAGGAGCGG                                                                                                                                                                   >  2:5003093/1‑150           TGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGG                                                                                                                                                                  <  2:2802708/150‑1           TGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGG                                                                                                                                                                  <  1:2273362/150‑1           TGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGG                                                                                                                                                                  <  2:1478941/150‑1           TGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCCCTCCTACGACGGTCAGTGTCCAACCACCGAAGCAATACAATGTAGGAGCGGG                                                                                                                                                                  >  1:4612469/1‑150           TGGTGGATGACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGG                                                                                                                                                                  <  2:2802662/150‑1               GGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTA                                                                                                                                                              <  1:2229920/150‑1                 ATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACC                                                                                                                                                            <  2:3125102/150‑1                  TTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCC                                                                                                                                                           <  2:2567237/150‑1                      CTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCTTTTGGGCTGACGGGTTGTGGTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCTATGAAATCCATTTTAGGAGCGGGTTTACCCGCGA                                                                                                                                                       <  1:4410465/150‑1                      CTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTTTGCAACCACCCAGGCAAAACAATGTAGGAGCGGGTTTACCCGCGA                                                                                                                                                       >  1:2770738/1‑150                       TGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATTCAATCCATTGTAGGAGCGGGTTTACCCGCGAA                                                                                                                                                      >  2:1076045/1‑150                                                                                                gaGGGTAAACCCGATCCTACGACGGTCTGTGTCCAACCACAGATGCAATCCATTGGAGTAGCGGGTTTACCCGAGAAGAGGCAAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCACGCCAACCCCTCCTTCAGGa                                                                             >  2:2897447/3‑149                                                                                                        ACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACC                                                                     >  2:3015798/1‑150                                                                                                        ACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACC                                                                     >  2:3015639/1‑150                                                                                                        ACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACC                                                                     >  1:2572676/1‑150                                                                                                          CCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAG                                                                   >  2:3249946/1‑150                                                                                                                 TACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGT                                                            >  1:94999/1‑150                                                                                                                                                       tcttcGCGGGTAAACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGC                      >  2:731034/6‑150                                                                                                                                                       TAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGC                      <  2:94999/150‑1                                                                                                                                                          gcGCGGTTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCA                   <  1:2408435/148‑1                                                                                                                                                            GCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATA                 <  1:2971414/150‑1                                                                                                                                                                 TTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCC            >  2:1149872/1‑150                                                                                                                                                                 TTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCC            >  2:1149684/1‑150                                                                                                                                                                 TTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGAGACAGCGCCCATACCGCC            >  2:1149763/1‑150                                                                                                                                                                  TTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCG           <  1:621274/150‑1                                                                                                                                                                   TACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGT          <  2:1652188/150‑1                                                                                                                                                                     CCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCAAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTAT        >  2:3260481/1‑150                                                                                                                                                                      CCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT       <  1:2266385/150‑1                                                                                                                                                                      CCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATT       <  1:2266498/150‑1                                                                                                                                                                      CCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGAATa       >  2:1416810/1‑149                                                                                                                                                                      CCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGAATa       >  2:3996079/1‑149                                                                                                                                                                       CGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTC      >  1:5090177/1‑150                                                                                                                                                                         CGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGG    <  1:4272243/150‑1                                                                                                                                                                         CGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGG    >  1:614752/1‑150                                                                                                                                                                          GAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGC   <  2:684672/150‑1                                                                                                                                                                           AAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCG  <  2:1347772/150‑1                                                                                                                                                                                                                                                                                                                                  GTACGGCGGCTGGTGGATTACCTGAAGGAGGGGTTGGCGGGGTTGCCGGAGTATCGTTTCGGCTGACGGGATGTGCTGCTGGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1811628‑1811457 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaaGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTTCAGGTAATCCACCAGCCGCCGTACCTTCGGCGACAGGTGCCTCTGCTGCGGATACAGCGCCCATACCGCCGTATTCGGCG  >  NC_002947/1811537‑1811684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.