| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1906724 = | 84 (0.550) | 10 (0.080) | 8/224 | NT | 14.3% | intergenic (+22/+106) | nirD/PP_1707 | nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein |
| ? | NC_002947 | 1906818 = | 52 (0.420) | intergenic (+116/+12) | nirD/PP_1707 | nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein | |||||
GGCGAGATGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1906898‑1906724‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTCGA > NC_002947/1906818‑1906966 GGCGAGATGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAG < 1:3374268/150‑1 GAGATGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAG > 2:3952999/1‑150 AGATGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGC < 2:457357/150‑1 ATGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGG < 1:4345862/150‑1 TGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGG < 2:3196271/150‑1 GGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCCACCCCGCTCCCCCCCCGGCGGCGCCGGATTAAAAGGCGGGGCAGCTTCAGTAGGAGCGGGC > 1:3459545/1‑150 TGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTAATACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTT > 2:2010475/1‑150 CCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGC < 2:5004036/150‑1 CCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAACGCCGTGCAGATTCCGTAGGAGCCGGCTTGCCCcc > 2:3977759/1‑148 CAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACACGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCG < 2:2860064/150‑1 CAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCG > 2:2890845/1‑150 AGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCCACAGGGGCGGCGCCGGATTAAAAGGCGGTGCAGAATCCGTCGGAGCGGGCTTGCCCGCGA > 1:5100703/1‑150 TTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAAC > 2:4232642/1‑150 TGGCCTCTTCGCGGGCAAGCCCGCTCCCCCAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTCGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCC > 2:3052149/1‑150 TCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTAAAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACAAGATAACCAACCCCAGCGGCGTGCGCCCGGCAAACACATCCACCAG > 2:3607900/1‑150 AAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCA > 1:1058691/1‑150 CCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCA > 2:3757709/1‑150 CGCTCCCACCGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCTTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATC > 1:3496631/1‑150 CGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATC > 1:292219/1‑150 CGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATC > 2:997289/1‑150 GCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCT > 1:2346135/1‑150 GCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAG > 1:4676826/1‑70 GCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAG < 2:4676826/70‑1 AGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGT < 2:1058691/150‑1 gggcGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCACGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGG < 1:3786341/146‑1 GGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGT < 1:4155935/150‑1 GGGCTCCCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAG < 1:2305118/150‑1 GGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGG > 2:2340809/1‑150 GCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGA < 1:3710563/150‑1 GCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGA < 1:2117219/150‑1 GCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGA > 1:3669113/1‑150 aaGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACT > 2:749570/3‑150 TTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACT > 2:3468912/1‑150 GCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACCTCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTAC < 2:3483509/150‑1 GCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTAC > 1:4130294/1‑150 CCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACAT > 2:3984027/1‑150 CCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACAT > 2:2918840/1‑150 CCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACAT > 2:1404962/1‑150 GCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCT > 1:1593182/1‑150 GCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCT > 1:1593179/1‑150 GAAGAGGCCGGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTC < 2:292219/150‑1 GAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACGTCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTC < 2:533014/150‑1 GAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTC < 2:2333178/150‑1 GAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTC < 1:951052/150‑1 GAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTC < 1:151759/150‑1 GAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCG > 2:5111156/1‑150 GCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTC > 2:1461157/1‑150 GCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTC > 1:847004/1‑150 GCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTC > 2:767673/1‑150 CAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTCGA > 2:4176129/1‑150 CAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAG < 2:3050428/130‑1 CAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAG > 1:3050428/1‑130 GGCGAGATGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1906898‑1906724‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTCGA > NC_002947/1906818‑1906966 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |