| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2059788 | 57 (0.370) | 11 (0.090) | 5/228 | NT | 15.6% | intergenic (+39/+89) | PP_1832/PP_1833 | oxidase/hypothetical protein |
| ? | NC_002947 | = 2059828 | 72 (0.570) | intergenic (+79/+49) | PP_1832/PP_1833 | oxidase/hypothetical protein | |||||
GCGGCGCTGGGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2059617‑2059788‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggtgaacccgctcctacGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGCCTGCATGCCCT < NC_002947/2059828‑2059682 GCGGCGCTGGGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGATCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTTGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCT < 2:4092053/150‑1 cgtCGCTGGGTTGAGTTGTGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCTGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTT < 1:3072717/147‑1 CGGCGCTGGGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTT < 1:3072870/150‑1 CTGGGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGG < 2:4504792/150‑1 CTGGGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGG < 1:2865613/150‑1 GGGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGT < 2:879326/150‑1 GGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGTG > 2:329915/1‑150 GTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGTGA > 2:4777321/1‑150 TTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGTGga > 2:1368895/1‑148 TGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTCTGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGTGAAC < 2:3933234/150‑1 GAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGTGGACC > 2:4097343/1‑150 GGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGTGAACCCGCTC < 1:2934314/150‑1 GGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGTGAACCCGCTC < 1:3068222/150‑1 GGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGGGTACCCccgcc > 2:2665012/1‑145 GTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGTGAACCCGCTCCT > 2:5116439/1‑150 GTGATACACCGTTTTGCCTGGCGTTGCGCTTGTAAGGCAGCGAGCAGGCCATGCAGGCGCGGTTTACGGCCGATGTGACTCCGCGGGCATTTCTTGGTATCGACGAGCTGTAAACGCATTGCC‑‑‑‑‑‑TGCAGCTACGCTGCTGAACCCGCACCa > 2:3415585/1‑149 TTTTGCCTGGCGTAGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGG < 1:2937537/150‑1 CATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAG > 2:1346869/1‑150 GCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGG < 2:1176166/150‑1 CAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGG < 1:1707706/150‑1 CAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGG < 1:1346869/150‑1 CAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGG < 2:3290338/150‑1 CAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGG < 2:1453700/150‑1 GCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGG < 1:4072299/150‑1 GCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGG < 1:1063200/150‑1 ACGGGCTATGTGACTGCGCGGGCATTTCTTGTTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAA < 1:3753465/150‑1 ACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAA < 2:1159392/150‑1 GAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGC > 1:1711317/1‑150 ACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTTGGCATCGCGCAGTCAATGTTGGCGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGCCT < 2:2102805/150‑1 ACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCCAGGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCCATGCGATAACAGCTCGTCGATACCAAGACATGCCCGCGCAGTCACATCGCCCGTAAACCGCGCCa > 1:1074634/1‑149 ACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGCCT > 1:159327/1‑150 ACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGC < 2:1074635/148‑1 ACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGC > 1:1074635/1‑148 CCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGCCTG > 1:3345583/1‑150 CCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGCCTGC > 1:3361297/1‑150 CGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGCCTGCA > 1:5092242/1‑150 GCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGCCTGCAT > 1:5116439/1‑150 GCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGCCTGCAT > 1:495381/1‑150 GCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGCCTGCAT > 2:3535257/1‑150 GCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAA > 2:1590174/1‑71 GCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAA < 1:1590174/71‑1 CTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGCCTGCATGCCC > 1:393821/1‑150 TACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGCCTGCATGCCCT > 2:2719876/1‑150 TACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGCCTGCATGCCCT > 1:1789591/1‑150 TACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATGACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGCCTGCATGCCCT > 2:2919198/1‑150 GCGGCGCTGGGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCC‑‑‑‑‑‑GGCCGCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2059617‑2059788‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggtgaacccgctcctacGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCGGCAATGCGATTACAGCTCGTCGATACCAAGAAATGCCCGCGCAGTCACATCGCCCGTAAACCGCGCCTGCATGCCCT < NC_002947/2059828‑2059682 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |