| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4744569 = | 135 (0.890) | 7 (0.050) | 4/262 | NT | 5.2% | coding (1390/1593 nt) | PP_4197 | GntR family transcriptional regulator |
| ? | NC_002947 | 4744623 = | 126 (0.870) | coding (1336/1593 nt) | PP_4197 | GntR family transcriptional regulator | |||||
GCGGCTACGACCGGCATCTGCGCTACATACGCCAGGAATATCGCAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4744724‑4744569‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtcaTCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGATGCCGGTCGTAGCCGCCATTTTCCAGGTAGGCTGCCACGCCCATCTGCGTCACGCTACA > NC_002947/4744623‑4744767 GCGGCTACGACCGGCATCTGCGCTACATACGCCAGGAATATCGCAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTC < 1:4075618/150‑1 TACGACCGGCATCTGCGCTACATACGCCAGGAATATCGCAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTC > 2:3797731/1‑150 CCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGATGCCG > 1:3732000/1‑150 CCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGATGCCGGTCGTAGCC > 2:3948147/1‑150 CCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGATGCCGGTCGTAGCC > 2:3948211/1‑150 CCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGA < 1:1235461/112‑1 CCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGA > 2:1235461/1‑112 CCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTG > 1:1296383/1‑109 CCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTG < 2:1296383/109‑1 GGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGATGCCGGTCGTAGCCGCCATTTTCCAGGTAGGCTGCCACGCCCATCTGCGTCACGCTACA < 1:2757399/150‑1 GCGGCTACGACCGGCATCTGCGCTACATACGCCAGGAATATCGCAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4744724‑4744569‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtcaTCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGATGCCGGTCGTAGCCGCCATTTTCCAGGTAGGCTGCCACGCCCATCTGCGTCACGCTACA > NC_002947/4744623‑4744767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |