| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4962906 | 124 (0.810) | 9 (0.060) | 7/268 | NT | 7.0% | intergenic (‑121/+143) | fliE/atoC | flagellar hook‑basal body complex protein FliE/two‑component system DNA‑binding transcriptional activator AtoC |
| ? | NC_002947 | = 4963009 | 118 (0.800) | intergenic (‑224/+40) | fliE/atoC | flagellar hook‑basal body complex protein FliE/two‑component system DNA‑binding transcriptional activator AtoC | |||||
ATCAGACGATTGAATTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4962754‑4962906‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggaACGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGACGCAAGGCCGCTCCCGCAGGAATTGTGTGATCTCTGGGAAATGAGTTGCGAAGGCTG < NC_002947/4963009‑4962861 ATCAGACGATTGAATTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCG > 1:195133/1‑150ATCAGACGATTGAATTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTATTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTACGCAACTCATTTCCCAGAGATCACACAATTCCTGCG > 1:4091830/1‑150 aCAGACGATTGAATTCAACACCTTGGCACATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGG < 2:2776050/149‑1 TCAGACGATTGAATTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGG < 2:4877758/150‑1 TCAGACGATTGAATTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGG < 2:4877517/150‑1 TCAGACGATTGAATTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGG < 2:217514/150‑1 AGACGATTGAATTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGA > 1:21670/1‑150 GGCACATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGTGTCGCGAATGGG < 1:2999634/150‑1 CGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAACGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGC < 1:315766/150‑1 CAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGCGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGA < 1:2601521/150‑1 AAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGACGCAA < 1:4266897/150‑1 AAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAACGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGACGCAA < 1:418461/150‑1 AAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGAACGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGACGCAA < 1:418499/150‑1 AGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAAGTCCTGCGGGAACGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGACGCAAG < 2:2868603/150‑1 CCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGAC < 2:1830253/119‑1 CCAGAGATCACACAATTCCTGCGGGAGCGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGAC > 1:1830253/1‑119 AACGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGACGCAAGGCCGCTCCCGCAGGAATTGTGTGATCTCTGGGAAATGAGTTGCGAAGGCTG > 1:4406105/1‑150 ATCAGACGATTGAATTCAACACCTTGGCTCATGACCCTTCTCTCTCCTGCGGCCGCATTTTTTTGACAGTCATGCGGCGAATGACCTACCTAAAGCAACAAAGGTGCCAGCCTTCGCAACTCATTTCCCAGAGATCACACAATTCCTGCGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4962754‑4962906‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggaACGGCCTTGTGTCGCGAATGGGGCGCGAAGCGGCCCCAGGTCTTCAGCTCCGCCGCAAAGATCGCCGGGGCCGCTCTGCGGCCCTATCGCGACGCAAGGCCGCTCCCGCAGGAATTGTGTGATCTCTGGGAAATGAGTTGCGAAGGCTG < NC_002947/4963009‑4962861 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |