| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5127055 | 91 (0.600) | 20 (0.140) | 7/258 | NT | 19.0% | intergenic (+59/‑123) | PP_4511/PP_4512 | AraC family transcriptional regulator/DMT superfamily permease |
| ? | NC_002947 | = 5127136 | 86 (0.600) | intergenic (+140/‑42) | PP_4511/PP_4512 | AraC family transcriptional regulator/DMT superfamily permease | |||||
CAGGTGGGGTATAGCTCGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5126898‑5127055‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggcccTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGACTGCTGTCAGTTATCG < NC_002947/5127136‑5126987 CAGGTGGGGTATAGCTCGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTT < 2:44517/150‑1 gGGGGTATAGCTCGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCG < 2:145158/149‑1 TGGGGTATAGCTCGCATAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCG < 2:4394411/150‑1 TGGGGTATAGCTCGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCG < 2:145088/150‑1 TGGGGTATAGCTCGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCG < 2:1737589/150‑1 TGGGGTATAGCTCGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCG < 2:1737702/150‑1 GGGGTATAGCTCGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGG < 2:2254399/150‑1 GGGTATAGCTCGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGC < 1:2307964/150‑1 GGTATAGCTCGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCC < 1:400262/150‑1 CAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTA < 1:4901087/150‑1 CAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTA < 1:4901089/150‑1 CAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTA < 1:1855732/150‑1 AGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTAC > 2:125093/1‑150 CCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATC < 1:4907657/150‑1 GCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCTTTCGCGGGTAAACCCGATCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAG < 1:3086635/150‑1 GCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAG < 1:3647056/150‑1 TTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGA < 1:4801373/150‑1 TTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGA < 2:4504995/150‑1 TTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGA < 2:4505071/150‑1 TTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGA < 1:493478/150‑1 TTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGA < 1:2331447/150‑1 TTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGACCCTTCGCGGGTAAAACCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGA < 1:3407523/150‑1 TTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAG < 1:125093/150‑1 CGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTCCAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGG < 2:2104167/150‑1 GAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTAC < 1:1675056/150‑1 GAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTCTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTAC < 1:4254204/150‑1 gagAACGGACAGCAGTCTGGCGACAGCATGTGTTGGCCTGCGGCTGTACACTTTGCCTTTGCCGGCCCCTTCGTGGGTAAAGCCGCTCCTCCCGGTTTTGCACAACATTCCGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGG < 2:4414616/147‑1 GTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGC < 2:2214943/106‑1 GTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGC > 1:2214943/1‑106 CCGGCCCTTTCGCGGGTTAACCCCCGCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCGGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCACAGGCAAACACAATCGGTCGCAAGACGGCGGTCg > 2:1040982/1‑149 CGGCCCTTTCGCGGTTAACCCCGCTCCTACAGTTTTTGCAAAACTTTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGACTGCTGTCAG < 2:3950301/150‑1 CTTTCGCGGTAAACCCCGCTCCTAC‑TGTTTTGCACAACATTCGGGGGGGGGCATCCTGTAGGCGCGGTTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGACTGCTGTCAGTTATCG < 1:2897310/150‑1 CAGGTGGGGTATAGCTCGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5126898‑5127055‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggcccTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGACTGCTGTCAGTTATCG < NC_002947/5127136‑5126987 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |