| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5694540 | 151 (0.990) | 12 (0.090) | 9/254 | NT | 8.0% | intergenic (+31/‑139) | PP_4994/PP_4995 | hypothetical protein/exopolysaccharide biosynthesis protein |
| ? | NC_002947 | = 5694602 | 137 (0.980) | intergenic (+93/‑77) | PP_4994/PP_4995 | hypothetical protein/exopolysaccharide biosynthesis protein | |||||
GCGGCGCAACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5694381‑5694540‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggcaTGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCAGGTGCGGATGATCTC < NC_002947/5694602‑5694456 GCGGCGCAACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTC > 2:3347116/1‑150GCGGCGCAACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTC < 1:4977543/150‑1GCGGCGCAACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTC < 1:4977775/150‑1 AACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGG < 2:5120687/150‑1 AACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGG < 1:3817857/150‑1 AACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGG < 2:1924798/150‑1 AACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGG < 2:1565183/150‑1 ACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGag < 1:3182358/150‑3 ACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGG < 1:4806867/150‑1 ACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCACGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGG < 2:2182655/150‑1 CGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGC < 2:1033341/150‑1 GCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCA > 2:53016/1‑150 GCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCA > 2:3956621/1‑150 GCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCA > 1:988534/1‑150 GCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCAGGTGCCGGCCTCTTCGCGGGCGTGCCCGCgaa < 2:2078572/150‑4 ATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGA < 1:4334275/150‑1 TTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCAGCCCCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGG < 2:3909342/150‑1 GCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGC < 2:4258555/150‑1 GCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGC < 2:2371277/150‑1 GCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGC < 2:3279915/150‑1 TGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGT < 2:3286659/150‑1 GGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCAGCCCCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTG < 1:4216840/150‑1 CGCCCCGGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCTTTTGCCAGCCCCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGA < 2:1746980/150‑1 gcccgTGGCGCTTGGCCGGGGGGGACGGTTTGTCATGTAACTGTTTTTCTGCATGTGCGGGCCCCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAG < 1:4302397/145‑1 ACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCC > 1:1837859/1‑103 ACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCC < 2:1837859/103‑1 gcgggaGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCAGGTGC > 1:1129130/7‑150 ccgTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGGGGGAGCGGGCGTGCCAGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCAGGTGCG > 2:4475248/4‑150 TCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCACAGCGCCAGGTGCG > 1:656587/1‑150 TTCGGGGGAATGCCCGCTCCCGCCTATACTCCACAGTCTTCAGCGCCGGTTAGCAACCCGTGGGTGGGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCAGGTGCGGA < 1:4841023/150‑1 gGGGCAGGCCCGCCCCCGCCTATACCCCACCGGCTTCCGCGCCGGGGCCCACCCGGGGGGAGGGGGGGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCAGGTGCGGATGAT < 1:1726167/149‑1 GGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCAGGTGCGGATGATC < 2:2061058/150‑1 GGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCAGGTGCGGATGATC < 1:2540352/150‑1 GGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCAGGTGCGGATGATC < 1:5109197/150‑1 GGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCAGGTGCGGATGATCT < 2:4892212/150‑1 GCATGCCCGCTCCCGCCGATACTCCACCGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCAGGTGCGGATGATCTC < 2:2095063/150‑1 GCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCAGGTGCGGATGATCTC < 2:1281781/150‑1 GCGGCGCAACGCATCGTGCGGCTGGCCGCGCCGTTTGCACCGTTTACCGGGGATCTAGCCGAGTTCGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5694381‑5694540‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggcaTGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCACATGCAGAAAATCAGTTACTGGACAAACGGTCCCCACGGGCAAAGCGCCAGGTGCGGATGATCTC < NC_002947/5694602‑5694456 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |