| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6079822 | 97 (0.640) | 11 (0.090) | 9/228 | NT | 11.8% | intergenic (‑146/+92) | PP_5329/PP_5330 | phosphate ABC transporter substrate‑binding protein/MFS transporter |
| ? | NC_002947 | = 6079874 | 85 (0.680) | intergenic (‑198/+40) | PP_5329/PP_5330 | phosphate ABC transporter substrate‑binding protein/MFS transporter | |||||
CCGCCATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6079652‑6079822‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcctcttcgcggctaaagccgCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCTGCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCATGCGGCCTGCCGA < NC_002947/6079874‑6079728 CCGCCATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTG < 2:84161/150‑1CCGCCATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTG < 1:1528521/150‑1CCGCCATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTG < 1:1528522/150‑1CCGCCATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTG < 1:65196/150‑1 CGCCATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGACGCAGGTCTGG > 2:5104383/1‑150 GCCATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGC < 1:55189/150‑1 GCCATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGC < 2:3695503/150‑1 GCCATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGC < 2:1180161/150‑1 GCCATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGC < 1:5118434/150‑1 CCATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCC < 2:1347514/150‑1 CATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCT < 1:217271/150‑1 ATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTC > 2:3773367/1‑150 ATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCAGGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTC > 2:3773562/1‑150 TCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCT > 1:1388567/1‑150 AAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTC > 2:1370919/1‑150 AAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTC < 2:4451881/150‑1 AACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCG > 1:1839114/1‑150 ACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGC < 1:4860997/150‑1 TTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAGGCAGGTCTGGCCTCTTCGCGGCT > 1:3595344/1‑150 TTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCT > 2:1207396/1‑150 GTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAG < 2:4577996/150‑1 TTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCC > 2:2700019/1‑150 CGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCC < 1:4038886/150‑1 CCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTc > 2:1020151/1‑149 CCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTA < 1:1026376/150‑1 AAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGTTCCTACAGGGGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGT < 1:6401/150‑1 TATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAAC < 2:1178593/150‑1 tctGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTATGGCCTCTTCGCGGCTACAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGG < 1:531090/147‑1 TCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGG < 1:3086306/150‑1 CGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGC < 1:2082775/150‑1 AGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTA < 1:3443230/150‑1 TGAATACGCTATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAA < 2:2791088/150‑1 TGAATACGATATGACTTCATTGTGACAATTGGATTAAAGGCAATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGCCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAA < 1:2147847/150‑1 TGGCCTCTTCGCGGCTAAATCCGCTCCTACA‑‑‑GGTTAGGGGTCGGCCTTGAGGCCTTTGCAAACCCCCTGTGGGAACGGCTTTAGCCGCGAAGAGGCCAGACCTGCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATC > 2:3713060/1‑150 CCTCTTCGCGGCTACCGCCGCTCCTACC‑‑‑GGTTTGGTGTCGGCCTGGAGGCCTGTGCAAACCCCCTGTAGGACCGGCTTTAGCCGCGAAGAGGCCAGACCTGCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTA < 1:3735640/150‑1 CCTCTTCGCGGCTAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCTGCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTA < 2:788835/150‑1 GCGGCTAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCTGCTTCCAGTGATGGCCTTTCATCCACTTGTCACAATGAAGTCATAAAGTATTCATGC > 1:1093744/1‑150 GCGGCTAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCTGCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCATGC > 1:3366622/1‑150 GCGGCTAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCTGCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCATGC > 1:4639472/1‑150 GCGCCTAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCTGCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCATGC > 2:3725025/1‑150 GCTAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCTGCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCATGCGGC > 1:3654190/1‑150 TAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCTGCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCATGCGGCCT > 2:3515091/1‑150 TAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCTGCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCATGCGGCCT > 1:3840717/1‑150 TAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCTGCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCATGCGGCCT > 1:3336508/1‑150 TAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCTGCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCATGCGGCCT > 2:477228/1‑150 TAAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCTGCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCATGCGGCCT > 2:477286/1‑150 AAAGCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCTGCTTCCAGTGATGGCCTTTCATCCTATTGTCACAATGAAGTCATATCGTATTCATGCGGCCTG > 1:2810968/1‑150 GCCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCTGCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCATGCGGCCTGCCG > 1:807304/1‑150 CCGCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCTGCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCATGCGGCCTGCCGA > 1:1352205/1‑150 GCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGC > 2:1656014/1‑74 GCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGC < 1:1656014/74‑1 CCGCCATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6079652‑6079822‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcctcttcgcggctaaagccgCTCCTACA‑‑‑GGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCTGCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCATGCGGCCTGCCGA < NC_002947/6079874‑6079728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |