| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 209595 = | NA (NA) | 6 (0.040) | 6/266 | NT | 100% | coding (15101/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | NC_002947 | 209619 = | 0 (0.000) | coding (15125/26049 nt) | PP_0168 | putative surface adhesion protein | |||||
ACAACGATGCGGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCCGCTTCGGTCCAAGTGACCGACACCCTCGACGAAGTGGTGGCCAAACTGACCGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACTGTGCCGGCCAAC > NC_002947/209472‑209752 | cagtgatgacggttttgccgtcgctcagcgtgaaggtcaatgcactgtggttgttgatcggcagaccgtctttgttggtcagcgtgatggtgtaagtgatctcaccgccttcggtcaccgaaggggtggcggtcagtttggccaccaCtt < 1:2202198‑M2/3‑1 (MQ=255) agtgatgacggttttgccgttgctcagcgtgaaggtcaatgcactgtggttgttgatcggcagaccgtctttgttggtcagcgtgatggtgtaagtgatctcaccgccttcggtcaccgaaggggtggcggtcagtttggccaccaCTTc < 1:3755773‑M2/4‑1 (MQ=255) agtgatgacggttttgccgtcgctcagcgtgaaggtcactgcactgtggttgttgatcggcagaccgtctttgttggtcagcgtgatggtgtaagtgatctcaccgccttcggtcaccgaaggggtggcggtcagtttggccaccaCTTc < 1:3140250‑M2/4‑1 (MQ=255) agtgatgacggttttgccgtcgctcagcgtgaaggtcaatgcactgtggttgttgatcggcagaccgtctttgttggtcagcgtgatggtgtaagtgatctcaccgccttcggtcaccgaaggggtggcggtcagtttggccaccaCTTc > 1:246028‑M2/147‑150 (MQ=255) agtgatgacggttttgccgtcgctcagcgtgaaggtcaatgcactgtggttgttgatcggcagaccgtctttgttggtcagcgtgatggtgtaagtgatctcaccgccctcggtcaccgaaggggtggcggtcagtttggccaccaCTTc < 1:3867713‑M2/4‑1 (MQ=255) agtgatgacggttttgccgtcgctcagcgtgaaggtcaatgcactggggttgttgatcggcagaccgtctgtgttggtcagcgtgatggtgtaagtgatctcaccgccttcggtcaccgaaggggtggcggtcagtttggccaccactgc > 2:3940419‑M2/147‑148 (MQ=255) gtgatgacggttttgccgtcgctcagcgtgaaggtcaatgcactgtggttgttgatcggcagaccgtctttgttggtcagcgtgatggtgtaagtgatctcaccgccttcggtcaccgaaggggtggcggtcagtttggccaccaCTTCg > 1:4468045‑M2/146‑150 (MQ=255) ttcggtcaccgaaggggtggcggtcagtttggccaccaCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAAc > 1:2127737‑M2/39‑150 (MQ=255) ccgaaggggtggcggtcagtttggccaccaCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGtcatca > 1:348990‑M2/31‑150 (MQ=255) cgaaggggtggcggtcagtttggccaccaCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCAc > 2:2132297‑M2/30‑150 (MQ=255) ggggtggcggtcagtttggccaccaCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCg > 1:2087986‑M2/26‑90 (MQ=255) ggggtggcggtcagtttggccaccaCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCg < 2:2087986‑M2/65‑1 (MQ=255) gtcagtttggccaccaCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACTGTGCCGGCCAAc < 1:2132297‑M2/134‑1 (MQ=255) | ACAACGATGCGGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCGCACCTTCGAAAACCTGGAGCTGGGCGGTGCCGCTTCGGTCCAAGTGACCGACACCCTCGACGAAGTGGTGGCCAAACTGACCGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACTGTGCCGGCCAAC > NC_002947/209472‑209752 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |