| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,703,290 | A→G | 28.6% | intergenic (+97/‑70) | lysS → / → PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,703,290 | 0 | A | G | 28.6% | 165.8 / 82.1 | 122 | intergenic (+97/‑70) | lysS/PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (57/22); new base G (21/13); total (78/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.31e-01 | |||||||||||
Only 100 of 132 total aligned reads displayed.
CGCCGTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAA > NC_002947/1703141‑1703439 | cGCCGTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACaaa < 1:2976601/150‑1 (MQ=255)cGCCGTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACaaa < 1:2676004/150‑1 (MQ=255)cGCCGTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCAGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCATTTTCTTGCCTGAAGCTTTATGTTGTCACTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACaaa < 2:4973298/150‑1 (MQ=255) gCCGTCGATCCGCGATGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCGCCGACAAAg > 2:1105222/1‑150 (MQ=255) gCCGTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAg < 2:2811862/150‑1 (MQ=255) gCCGTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAg < 2:4563271/150‑1 (MQ=255) ccGTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑ACCGCTCCAACCAAgg > 1:1814886/1‑150 (MQ=255) cGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑tt < 1:1310916/150‑1 (MQ=255) cGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑tt < 2:4165352/150‑1 (MQ=255) tCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTa < 2:859385/150‑1 (MQ=255) tCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTGTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCCCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTa < 2:3272744/150‑1 (MQ=38) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGCACGAGCCGCCTTTCGAGGCGGCTTTTTCGTGCCTGAAGCTTTATGTTGTCAGTACCGGCCCCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGa < 2:3070842/150‑1 (MQ=38) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑ACCGCTCCGACAAAGGCC‑GTGTAGGa > 2:1717673/1‑150 (MQ=255) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCCCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGa < 2:146545/150‑1 (MQ=255) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCCCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGa < 2:2663800/150‑1 (MQ=255) gACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGAGc < 1:3831805/150‑1 (MQ=255) gACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGc < 2:465340/150‑1 (MQ=255) gACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGc < 2:2994184/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGAGCgg < 1:4437563/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGAGCgg < 1:3383707/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCgg < 2:2037734/150‑1 (MQ=255) gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGAGCggg < 1:654457/150‑1 (MQ=255) gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGAGCggg < 1:789792/150‑1 (MQ=255) aTCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑ACCGCGCCGACAAAGGCC‑GTGTAGGAGCGGGttt > 1:1237520/1‑150 (MQ=255) tCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTa < 2:4600440/150‑1 (MQ=255) tCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTa > 1:428529/1‑150 (MQ=255) ccGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGaa > 1:3366195/1‑150 (MQ=255) gCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑ACCCCACCAACAAATGCC‑GTGTATGAGCGGGTTTT‑CCCGCCAAgg > 1:953269/1‑150 (MQ=255) cacaGGCGTCGGCAGGCCGGTGTGTGCGGAACGCGCCGCCTTTCGCGGCGGCTTTTTTTGGCCTGACGCTTTTTGTTGTCCGTACCGGCCTCTGCGCGGGCAAA‑CCCGCCCCACCAACGGCC‑TTGTCGGCGCGGGTTTA‑CCCGCGAAggg < 2:4768203/150‑1 (MQ=255) cGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGAGCgg > 1:1939354/1‑124 (MQ=255) cGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGAGCgg < 2:1939354/124‑1 (MQ=255) gctggCGTGCGTGCGCTTACCGCGCCGCCTTGCGTGGGGGCTTTTTCTTGCCTGACGATTTTTGTTGACAGGACGGCCCTCGTCGGGGTTAAA‑CCGGATCCACCAAAGGCC‑TTGTAGTTGGGGTTTAA‑CCCGCGAAGGGGCCAGCACTGa < 2:1753437/147‑1 (MQ=255) aGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑g > 2:3471344/1‑150 (MQ=255) ggCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTCGTCAGTGCTGGCCCCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCGGTACTGAcaa < 2:1191620/150‑3 (MQ=17) ggCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTGGCCTGAAGCTTTATGTCGTCCGTGCTGGCCCCTTCGCGGGTAAA‑CCCGCTCCTACACGGCCT‑TTGTCGGAGCGGGTTTA‑CCCGCGAAGAGGCCGGTACTGAcaa < 2:250056/150‑3 (MQ=17) gCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑ACCGCACCAACAAAGGCC‑GTGTAGGTGCGGGTTTT‑CCCCCGAAGGGGCCAGCACGGAC‑Gaa > 1:3629931/1‑150 (MQ=38) gagtgagCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTCGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAacac > 2:2851178/1‑150 (MQ=255) gtgtgCTGAACGAGCCGCCTTTCGTGGCGGCTTTTTCTTGCCTGTTGCTTTTTGTTGTCCGTACCGGCCTGTTCGCGGTTAAA‑CCCGCTCCTACAAAGGCA‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACAccc < 2:1657524/150‑1 (MQ=37) tgagCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACAcccc > 1:2905700/1‑150 (MQ=255) tGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATgc > 2:2929828/1‑149 (MQ=255) tGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCAAGa > 2:2110329/1‑150 (MQ=255) tGAACGAGCCGCCTTTCGAGGCGGC‑TTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAg > 2:3808943/1‑150 (MQ=255) ggAACGCGCCGCCTTTGGAGGGGGCTTTTTGTTGCCTGAAGGTTTTTGTTGTCAGTCCGGGCCTCTGCGGGGGTAAC‑CCCGCTCATACAACGGCC‑TTGTCGGCGGGGTTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGa < 2:1499518/149‑1 (MQ=255) gAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑ACCGCGCCTACAAAGGCC‑TTGTAGGAGCGGGGTTA‑CCCGCGAAGGGGCCCGCACAGAC‑GAAACACCCCCATGAGGTAt > 1:2018515/1‑150 (MQ=38) gccgccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAACGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACAGAC‑GAAACACCCCCCAGAGGTATcc > 2:4528909/1‑150 (MQ=255) tttCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGGAAA‑CCCCCTCCGACAAAGGCC‑GGGTAGGAGCGGGGTTA‑CCCCCGCAGGGGCCAGCACTGACGGAAAAACCCCCA‑GAGGGATccccccgg > 2:1336234/1‑147 (MQ=37) gcTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCCGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCCCCa > 2:4787442/1‑150 (MQ=255) tttttCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCGACAAACGCC‑TTGTAGGATCGGGTTTA‑CCCGCGAAGGGGCCCGCACAGAC‑GAAAAACCCCCATGAGGTATACCCCGTGACACCCGcccag > 2:248346/1‑147 (MQ=37) tttttCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGGAAA‑CCCCCTCCAACAAACGCC‑TTGTAGGAGGCGGTTTT‑ACCGCGAAGGGGCCAGCACAGAC‑GAAACACCCCCCTGAGGTAACCCCCGTGACACCCCCCaag > 2:162931/1‑148 (MQ=255) tttCTTGCCTGATGATTTTTGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAACGGCC‑TTGTCGGTGGGGTTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGcc < 1:1204164/150‑1 (MQ=37) cttaaGCTTTCTGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAACGGCC‑TTGTTGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAg < 2:1150859/147‑1 (MQ=255) cTTTATGTTGTCAGTACCGGCCTCTTCGCGGGGAAA‑CCCCCGCCTACAAACGCC‑GTGTAGGCGCGGGTTTA‑CCCCCCCAGGGGCCACCCCTGAC‑GCAACACCCCCCTGAGGTATACCCCCGGACCCCCCCCAGGCCTGACCAAGGcgccc > 2:579960/1‑149 (MQ=255) tATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGccgccg < 2:2882970/150‑1 (MQ=255) tctctcccGGCCTCTTCG‑GGGTAAACCCCGCCCCAACACCGGCG‑TTTTCGGAG‑GGGTTTACCCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGc < 1:1783926/144‑1 (MQ=255) ctctTCGCGGGTAAA‑ACCCCGCCTAAAAAAGCC‑GTGTAGGAGCGGGTTTA‑CCCCCGAAGGGGCCAGCACAGAC‑GAAACACCCCCAAGAGGTATACCCCGGGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCCTCGCCACCCCCGTCg > 2:870857/1‑150 (MQ=255) ggggttAAA‑CCCGCTCCACCCCCGGCC‑TGGTCGGCGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCCTGAGGTATCCCCCGTGACACCCGCCCTGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGaaa < 1:4153119/145‑1 (MQ=255) gcgGTTAAA‑CCCGCTCCTACAAAGGCC‑TTTTTGGAGCGGTTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGaaa < 2:1814886/150‑1 (MQ=255) gTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGt > 2:4255839/1‑150 (MQ=255) aaa‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGc > 1:2287889/1‑150 (MQ=255) a‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGACGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAACGCGTGCaa > 1:1491149/1‑150 (MQ=255) a‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCAAGAGGTATACCCCGTGACACCCGCCATCCCTGACCAAGGCGCCGCCGGCATCGCCACCCCCGTCGCCGAAAGCGTGCaa > 1:5081535/1‑150 (MQ=255) cccGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt > 1:2520851/1‑150 (MQ=255) cccGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt > 2:2194324/1‑150 (MQ=255) cccGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGAGCAAt > 1:4340068/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 2:2857746/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 2:1342003/1‑150 (MQ=255) ccGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:739690/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:29889/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:330993/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:1923059/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCGGTACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:4907609/1‑150 (MQ=37) gCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:3994713/1‑150 (MQ=255) gCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:550865/1‑150 (MQ=255) gCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:1796998/1‑150 (MQ=255) gCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:1485274/1‑150 (MQ=255) cTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCa > 1:4014417/1‑150 (MQ=255) cTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCa > 1:4014415/1‑150 (MQ=255) cTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCa > 1:4979174/1‑150 (MQ=255) tCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 1:709343/1‑150 (MQ=255) tCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 1:1821798/1‑150 (MQ=255) tCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCGGTACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:4845511/1‑150 (MQ=37) tCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCGGTACTGAC‑AAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:2102590/1‑150 (MQ=37) tCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 1:2945952/1‑150 (MQ=255) tCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:4231652/1‑150 (MQ=255) tCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGGGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCCCCGCCGGCGCCGAAAGCGTGCAATACCaa > 2:4684287/1‑150 (MQ=255) ccTACAACGGCC‑TTGTTGGTGGGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAg < 1:2039298/150‑1 (MQ=255) ccTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAg < 2:4979174/150‑1 (MQ=255) cTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 1:2715200/1‑150 (MQ=255) cTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 1:2736477/1‑150 (MQ=255) cTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 2:3883383/1‑150 (MQ=255) cTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 2:577682/1‑150 (MQ=255) tACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGc > 1:4420271/1‑150 (MQ=255) tACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGc > 2:2475881/1‑150 (MQ=255) aCAAAGGCT‑TTGTCGGCGGGGTTTAA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc < 1:1432691/150‑1 (MQ=255) aCAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 2:4821980/1‑150 (MQ=255) cAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCg > 2:3197990/1‑150 (MQ=255) cAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCg > 1:2381900/1‑150 (MQ=255) acaaGGCCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 2:713244/3‑150 (MQ=255) acaaGGCCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCGGTACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 1:1874831/3‑150 (MQ=38) aGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCaa > 1:4236327/1‑150 (MQ=255) | CGCCGTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAA > NC_002947/1703141‑1703439 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |