| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,703,292 | G→C | 27.3% | intergenic (+99/‑68) | lysS → / → PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,703,292 | 0 | G | C | 27.3% | 204.1 / 93.0 | 124 | intergenic (+99/‑68) | lysS/PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (62/28); new base C (21/13); total (83/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.22e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.71e-01 | |||||||||||
Only 100 of 131 total aligned reads displayed.
CCGTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAA > NC_002947/1703143‑1703439 | ccGTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑ACCGCTCCAACCAAgg > 1:1814886/1‑150 (MQ=255) cGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑tt < 1:1310916/150‑1 (MQ=255) cGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑tt < 2:4165352/150‑1 (MQ=255) aTCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑gtgt > 2:4153119/1‑150 (MQ=255) tCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTa < 2:859385/150‑1 (MQ=255) tCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTGTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCCCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTa < 2:3272744/150‑1 (MQ=38) tCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCGGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCGACAAAGGccgggga > 2:1621805/1‑145 (MQ=255) ccGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAg < 1:3495218/150‑1 (MQ=255) ccGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAg < 1:4736857/150‑1 (MQ=255) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGCACGAGCCGCCTTTCGAGGCGGCTTTTTCGTGCCTGAAGCTTTATGTTGTCAGTACCGGCCCCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGa < 2:3070842/150‑1 (MQ=38) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCCCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGa < 2:146545/150‑1 (MQ=255) gACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGc < 2:465340/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGAGCgg < 1:3383707/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGAGCgg < 1:4437563/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCgg < 2:2037734/150‑1 (MQ=255) gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGAGCggg < 1:654457/150‑1 (MQ=255) gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGAGCggg < 1:789792/150‑1 (MQ=255) gTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCggg < 2:4779027/150‑1 (MQ=255) aTCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑ACCGCGCCGACAAAGGCC‑GTGTAGGAGCGGGttt > 1:1237520/1‑150 (MQ=255) tCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTa < 2:4600440/150‑1 (MQ=255) tCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTa > 1:428529/1‑150 (MQ=255) ttCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTT‑ACcgc > 2:1432691/1‑150 (MQ=255) cGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGAGCgg > 1:1939354/1‑124 (MQ=255) cGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGAGCgg < 2:1939354/124‑1 (MQ=255) gctggCGTGCGTGCGCTTACCGCGCCGCCTTGCGTGGGGGCTTTTTCTTGCCTGACGATTTTTGTTGACAGGACGGCCCTCGTCGGGGTTAAA‑CCGGATCCACCAAAGGCC‑TTGTAGTTGGGGTTTAA‑CCCGCGAAGGGGCCAGCACTGa < 2:1753437/147‑1 (MQ=255) aGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑g > 2:3471344/1‑150 (MQ=255) ggCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTCGTCAGTGCTGGCCCCTTCGCGGGTAAA‑CCCGCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCGGTACTGAcaa < 2:1191620/150‑3 (MQ=17) ggCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTGGCCTGAAGCTTTATGTCGTCCGTGCTGGCCCCTTCGCGGGTAAA‑CCCGCTCCTACACGGCCT‑TTGTCGGAGCGGGTTTA‑CCCGCGAAGAGGCCGGTACTGAcaa < 2:250056/150‑3 (MQ=17) gCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑ACCGCACCAACAAAGGCC‑GTGTAGGTGCGGGTTTT‑CCCCCGAAGGGGCCAGCACGGAC‑Gaa > 1:3629931/1‑150 (MQ=38) gagtgagCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTCGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAacac > 2:2851178/1‑150 (MQ=255) gagtgagCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCCGCACTGAC‑GAAacac > 2:2851114/1‑150 (MQ=255) gtgtgCTGAACGAGCCGCCTTTCGTGGCGGCTTTTTCTTGCCTGTTGCTTTTTGTTGTCCGTACCGGCCTGTTCGCGGTTAAA‑CCCGCTCCTACAAAGGCA‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACAccc < 2:1657524/150‑1 (MQ=37) tGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATgc > 2:2929828/1‑149 (MQ=255) tGAACGAGCCGCCTTTCGAGGCGGC‑TTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAg > 2:3808943/1‑150 (MQ=255) gAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑ACCGCGCCTACAAAGGCC‑TTGTAGGAGCGGGGTTA‑CCCGCGAAGGGGCCCGCACAGAC‑GAAACACCCCCATGAGGTAt > 1:2018515/1‑150 (MQ=38) gccgccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAACGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACAGAC‑GAAACACCCCCCAGAGGTATcc > 2:4528909/1‑150 (MQ=255) ccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑ACCCCGCCGACAAAGGCC‑TTGTAGGAGCGGGGTTA‑CCCGCGGAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCg > 2:1795550/1‑150 (MQ=39) cTTTGGTGGCGTTTTTTTCTTGCGTGAAGTTTTTTGTTTTCATTACCGGCCTCTTGGGGGTTAAA‑CCCGCTCCTAAAACGGCG‑TTGTTGGAGGGGTTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGt < 2:3014346/150‑1 (MQ=255) cTTTCGTGGCGGCTTTTTCTTGCCTGATGTTTTATGGGGTATGTACCGGCCTCGTGGCGGGTAAA‑CCCGCTCCTCCACCGGCC‑TCGTTGGTGGGGGTTAA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGt < 1:4101373/150‑1 (MQ=255) tttCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGGAAA‑CCCCCTCCGACAAAGGCC‑GGGTAGGAGCGGGGTTA‑CCCCCGCAGGGGCCAGCACTGACGGAAAAACCCCCA‑GAGGGATccccccgg > 2:1336234/1‑147 (MQ=37) gcTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCCGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCCCCa > 2:4787442/1‑150 (MQ=255) tttttCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCGACAAACGCC‑TTGTAGGATCGGGTTTA‑CCCGCGAAGGGGCCCGCACAGAC‑GAAAAACCCCCATGAGGTATACCCCGTGACACCCGcccag > 2:248346/1‑147 (MQ=37) tttttCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑ACCGCACCTACAAAGGCC‑TGGTAGGAGCGGGTTTA‑CCCCCGAAGGGGCCGGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGGGACACCCGCCATg > 2:248407/1‑150 (MQ=38) tttttCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGGAAA‑CCCCCTCCAACAAACGCC‑TTGTAGGAGGCGGTTTT‑ACCGCGAAGGGGCCAGCACAGAC‑GAAACACCCCCCTGAGGTAACCCCCGTGACACCCCCCaag > 2:162931/1‑148 (MQ=255) tttCTTGCCTGATGATTTTTGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAACGGCC‑TTGTCGGTGGGGTTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGcc < 1:1204164/150‑1 (MQ=37) cttaaGCTTTCTGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAACGGCC‑TTGTTGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAg < 2:1150859/147‑1 (MQ=255) cTTTATGTTGTCAGTACCGGCCTCTTCGCGGGGAAA‑CCCCCGCCTACAAACGCC‑GTGTAGGCGCGGGTTTA‑CCCCCCCAGGGGCCACCCCTGAC‑GCAACACCCCCCTGAGGTATACCCCCGGACCCCCCCCAGGCCTGACCAAGGcgccc > 2:579960/1‑149 (MQ=255) tctctcccGGCCTCTTCG‑GGGTAAACCCCGCCCCAACACCGGCG‑TTTTCGGAG‑GGGTTTACCCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGc < 1:1783926/144‑1 (MQ=255) ctctTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCg < 2:2905700/150‑1 (MQ=255) ctctTCGCGGGTAAA‑ACCCCGCCTAAAAAAGCC‑GTGTAGGAGCGGGTTTA‑CCCCCGAAGGGGCCAGCACAGAC‑GAAACACCCCCAAGAGGTATACCCCGGGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCCTCGCCACCCCCGTCg > 2:870857/1‑150 (MQ=255) ccctTCGCGGGGAAA‑ACCCCGACAACAAGGCCT‑TTGTATGAGCGGGTTTA‑ACCGCGAAGGGGCCCGCACTGAC‑GAAAAACCCCCAGGAGGTATACCCCGTGAAACCCGCCAAGCCAGACCAAGGCGCCGCCGGCATAGCCCCCGCCCTCg > 2:1152941/3‑150 (MQ=255) ggggttAAA‑CCCGCTCCACCCCCGGCC‑TGGTCGGCGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCCTGAGGTATCCCCCGTGACACCCGCCCTGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGaaa < 1:4153119/145‑1 (MQ=255) gcgGTTAAA‑CCCGCTCCTACAAAGGCC‑TTTTTGGAGCGGTTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGaaa < 2:1814886/150‑1 (MQ=255) gcgGGTAAA‑CCCGCTCCAACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGaaa > 1:900292/1‑150 (MQ=255) aaa‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGc > 1:2287889/1‑150 (MQ=255) a‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGACGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAACGCGTGCaa > 1:1491149/1‑150 (MQ=255) a‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCAAGAGGTATACCCCGTGACACCCGCCATCCCTGACCAAGGCGCCGCCGGCATCGCCACCCCCGTCGCCGAAAGCGTGCaa > 1:5081535/1‑150 (MQ=255) cccGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt > 1:2520851/1‑150 (MQ=255) cccGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt > 2:2194324/1‑150 (MQ=255) cccGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGAGCAAt > 1:4340068/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:433320/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:3016684/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 2:2857746/1‑150 (MQ=255) ccGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:739690/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:330993/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:2888792/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:29889/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCGGTACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:4907609/1‑150 (MQ=37) gCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCGGTACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:4907331/1‑150 (MQ=37) gCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:550865/1‑150 (MQ=255) gCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:1796998/1‑150 (MQ=255) gCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:1485274/1‑150 (MQ=255) cTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCa > 1:4979174/1‑150 (MQ=255) cTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCa > 1:4014417/1‑150 (MQ=255) cTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCa > 1:4014415/1‑150 (MQ=255) tCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 1:1821798/1‑150 (MQ=255) tCCTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCGGTACTGAC‑AAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:2102590/1‑150 (MQ=37) tCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:2110552/1‑150 (MQ=255) tCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:4231652/1‑150 (MQ=255) tCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 1:2945952/1‑150 (MQ=255) tCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGGGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCCCCGCCGGCGCCGAAAGCGTGCAATACCaa > 2:4684287/1‑150 (MQ=255) ccTACAACGGCC‑TTGTTGGTGGGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAg < 1:2039298/150‑1 (MQ=255) ccTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAg < 2:4979174/150‑1 (MQ=255) cTACAAGGCCT‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 1:2715200/1‑150 (MQ=255) cTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 2:3883383/1‑150 (MQ=255) cTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 1:2736477/1‑150 (MQ=255) cTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 2:577682/1‑150 (MQ=255) aCAAAGGCT‑TTGTCGGCGGGGTTTAA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc < 1:1432691/150‑1 (MQ=255) aCAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 2:4821980/1‑150 (MQ=255) cAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCg > 2:3197990/1‑150 (MQ=255) cAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCg > 1:2381900/1‑150 (MQ=255) acaaGGCCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 2:713244/3‑150 (MQ=255) acaaGGCCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCGGTACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAATGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 2:1982827/3‑150 (MQ=38) acaaGGCCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCGGTACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 1:1874831/3‑150 (MQ=38) aaaGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 2:4388907/1‑150 (MQ=255) ggCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa > 1:4740241/1‑135 (MQ=255) ggCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa < 2:2170020/135‑1 (MQ=255) ggCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa < 2:4740303/135‑1 (MQ=255) ggCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa < 2:4740241/135‑1 (MQ=255) ggCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa > 1:2170020/1‑135 (MQ=255) | CCGTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTA‑CCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAA > NC_002947/1703143‑1703439 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |