| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,703,321 | G→A | 8.9% | intergenic (+128/‑39) | lysS → / → PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,703,321 | 0 | G | A | 8.9% | 418.7 / 22.3 | 145 | intergenic (+128/‑39) | lysS/PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (103/29); new base A (11/2); total (114/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.35e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 147 total aligned reads displayed.
GCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAGCGTC > NC_002947/1703172‑1703468 | gCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCCCACCAACAAATGCC‑GTGTATGAGCGGGTTTTCCCGCCAAgg > 1:953269/1‑150 (MQ=255) cacaGGCGTCGGCAGGCCGGTGTGTGCGGAACGCGCCGCCTTTCGCGGCGGCTTTTTTTGGCCTGACGCTTTTTGTTGTCCGTACCGGCCTCTGCGCGGGCAAACCCGCCCCACCAACGGCC‑TTGTCGGCGCGGGTTTACCCGCGAAggg < 2:4768203/150‑1 (MQ=255) ggCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTCGTCAGTGCTGGCCCCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGAcaa < 2:1191620/150‑3 (MQ=17) ggCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTGGCCTGAAGCTTTATGTCGTCCGTGCTGGCCCCTTCGCGGGTAAACCCGCTCCTACACGGCCT‑TTGTCGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGAcaa < 2:250056/150‑3 (MQ=17) gagtgagCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCCGCACTGAC‑GAAacac > 2:2851114/1‑150 (MQ=255) gtgtgCTGAACGAGCCGCCTTTCGTGGCGGCTTTTTCTTGCCTGTTGCTTTTTGTTGTCCGTACCGGCCTGTTCGCGGTTAAACCCGCTCCTACAAAGGCA‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACAccc < 2:1657524/150‑1 (MQ=37) tgagCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACAcccc > 1:2905700/1‑150 (MQ=255) tGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATgc > 2:2929828/1‑149 (MQ=255) tGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCAAGa > 2:2110329/1‑150 (MQ=255) tGAACGAGCCGCCTTTCGAGGCGGC‑TTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAg > 2:3808943/1‑150 (MQ=255) gAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCGCGCCTACAAAGGCC‑TTGTAGGAGCGGGGTTACCCGCGAAGGGGCCCGCACAGAC‑GAAACACCCCCATGAGGTAt > 1:2018515/1‑150 (MQ=38) gccgccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAACGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGAC‑GAAACACCCCCCAGAGGTATcc > 2:4528909/1‑150 (MQ=255) ccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCCCGCCGACAAAGGCC‑TTGTAGGAGCGGGGTTACCCGCGGAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCg > 2:1795550/1‑150 (MQ=39) cTTTCGTGGCGGCTTTTTCTTGCCTGATGTTTTATGGGGTATGTACCGGCCTCGTGGCGGGTAAACCCGCTCCTCCACCGGCC‑TCGTTGGTGGGGGTTAACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGt < 1:4101373/150‑1 (MQ=255) tttCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGGAAACCCCCTCCGACAAAGGCC‑GGGTAGGAGCGGGGTTACCCCCGCAGGGGCCAGCACTGACGGAAAAACCCCCA‑GAGGGATccccccgg > 2:1336234/1‑147 (MQ=37) tttttCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCGCACCTACAAAGGCC‑TGGTAGGAGCGGGTTTACCCCCGAAGGGGCCGGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGGGACACCCGCCATg > 2:248407/1‑150 (MQ=38) tttttCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGGAAACCCCCTCCAACAAACGCC‑TTGTAGGAGGCGGTTTTACCGCGAAGGGGCCAGCACAGAC‑GAAACACCCCCCTGAGGTAACCCCCGTGACACCCCCCaag > 2:162931/1‑148 (MQ=255) tttCTTGCCTGATGATTTTTGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGCC‑TTGTCGGTGGGGTTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGcc < 1:1204164/150‑1 (MQ=37) cttaaGCTTTCTGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGCC‑TTGTTGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAg < 2:1150859/147‑1 (MQ=255) cTTTATGTTGTCAGTACCGGCCTCTTCGCGGGGAAACCCCCGCCTACAAACGCC‑GTGTAGGCGCGGGTTTACCCCCCCAGGGGCCACCCCTGAC‑GCAACACCCCCCTGAGGTATACCCCCGGACCCCCCCCAGGCCTGACCAAGGcgccc > 2:579960/1‑149 (MQ=255) tATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGccgccg < 2:2882970/150‑1 (MQ=255) ctctTCGCGGGTAAAACCCCGCCTAAAAAAGCC‑GTGTAGGAGCGGGTTTACCCCCGAAGGGGCCAGCACAGAC‑GAAACACCCCCAAGAGGTATACCCCGGGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCCTCGCCACCCCCGTCg > 2:870857/1‑150 (MQ=255) gcgGTTAAACCCGCTCCTACAAAGGCC‑TTTTTGGAGCGGTTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGaaa < 2:1814886/150‑1 (MQ=255) gTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGt > 2:4255839/1‑150 (MQ=255) aCCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCAAGAGGTATACCCCGTGACACCCGCCATCCCTGACCAAGGCGCCGCCGGCATCGCCACCCCCGTCGCCGAAAGCGTGCaa > 1:5081535/1‑150 (MQ=255) cccGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt > 2:2194324/1‑150 (MQ=255) cccGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt > 1:2122014/1‑150 (MQ=255) cccGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt > 1:2520851/1‑150 (MQ=255) cccGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGAGCAAt > 1:4340068/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:3016684/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 2:4611160/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 2:2857746/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 2:1342003/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:433320/1‑150 (MQ=255) ccGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:739690/1‑150 (MQ=255) cagCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 2:3384744/3‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:1923059/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:29889/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:330993/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:4907609/1‑150 (MQ=37) gCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:3994713/1‑150 (MQ=255) gCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:1797207/1‑150 (MQ=255) gCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:1485274/1‑150 (MQ=255) cTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCa > 1:4979174/1‑150 (MQ=255) cTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCa > 1:4014417/1‑150 (MQ=255) tCCTACAAGGCCT‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 1:709343/1‑150 (MQ=255) tCCTACAAGGCCT‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 1:1821798/1‑150 (MQ=255) tCCTACAAGGCCT‑TTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:4845511/1‑150 (MQ=37) tCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:4231652/1‑150 (MQ=255) tCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:2110552/1‑150 (MQ=255) ccTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAg < 2:4979174/150‑1 (MQ=255) cTACAAGGCCT‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 1:2715200/1‑150 (MQ=255) cTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 2:577682/1‑150 (MQ=255) cTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 1:2736477/1‑150 (MQ=255) tACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGc > 2:2475881/1‑150 (MQ=255) aCAAAGGCT‑TTGTCGGCGGGGTTTAACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc < 1:1432691/150‑1 (MQ=255) aCAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 2:4821980/1‑150 (MQ=255) cAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCg > 1:2381900/1‑150 (MQ=255) acaaGGCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 2:713244/3‑150 (MQ=255) acaaGGCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAATGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 2:1982827/3‑150 (MQ=38) acaaGGCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 1:1874867/3‑150 (MQ=38) aGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCaa > 1:4236327/1‑150 (MQ=255) ggcctttGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCaa > 1:1485386/6‑150 (MQ=255) ggcctttGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCaa > 1:1485266/6‑150 (MQ=255) ggCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa < 2:4740241/135‑1 (MQ=255) ggCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa < 2:4740303/135‑1 (MQ=255) ggCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa > 1:4740303/1‑135 (MQ=255) ggCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa > 1:2170020/1‑135 (MQ=255) cc‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGAc > 1:2893117/1‑150 (MQ=255) c‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACt > 1:373465/1‑150 (MQ=255) c‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACAACCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACt > 1:4494720/1‑150 (MQ=255) ttGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTg > 2:625570/1‑150 (MQ=255) ttGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTg > 2:625565/1‑150 (MQ=255) ttGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTg > 2:3851818/1‑150 (MQ=255) ttGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTg > 1:1790477/1‑150 (MQ=255) gTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCACTACCAAGGCCGCAAGACTGcc > 2:3903550/1‑150 (MQ=255) ttcgCGGGTAAACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGc > 1:1631788/4‑150 (MQ=255) gAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGcc > 1:3800882/1‑150 (MQ=255) gAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGcc > 2:3149242/1‑150 (MQ=255) gCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCaa < 2:2888792/150‑1 (MQ=255) gCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCaa < 2:330993/150‑1 (MQ=255) gCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCaa > 1:1784796/1‑150 (MQ=255) cGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAg > 1:3714989/1‑150 (MQ=255) ggTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGc > 2:2637031/1‑150 (MQ=255) ggTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGc > 2:71851/1‑150 (MQ=255) ggTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGc > 1:2487787/1‑150 (MQ=255) ggTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGc > 1:926190/1‑150 (MQ=255) ggTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGc > 1:5107820/1‑150 (MQ=255) tttaccccGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCa < 1:1717673/145‑1 (MQ=255) gTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCATGGCGCCGCCGGCCTCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCa > 1:1126184/1‑150 (MQ=255) gTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCa > 1:3852532/1‑150 (MQ=255) ccGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAAc > 1:3300538/1‑150 (MQ=255) gcgAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCTAGACTGCCCGCCAAGGCAGCGAACAg > 2:1081354/1‑150 (MQ=255) gcgAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCa < 2:3052238/142‑1 (MQ=255) gcgAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCa > 1:3052238/1‑142 (MQ=255) gcgAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAg > 1:4719015/1‑150 (MQ=255) gAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAGCg > 2:507222/1‑150 (MQ=255) gAAGGGGCCAGCACTGAC‑GAAACACCCCAATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGACGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAGCg > 2:507357/1‑150 (MQ=255) aGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAAGAGCGTc < 2:709343/150‑1 (MQ=255) aGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAGCGTc < 2:1163752/150‑1 (MQ=255) | GCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAC‑GAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAGCGTC > NC_002947/1703172‑1703468 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |