| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,728,698 | A→G | 6.7% | intergenic (+50/+73) | cspA‑I → / ← PP_1523 | major cold shock protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,728,698 | 0 | A | G | 6.7% | 413.2 / 11.2 | 134 | intergenic (+50/+73) | cspA‑I/PP_1523 | major cold shock protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (59/65); new base G (4/5); total (63/71) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 142 total aligned reads displayed.
AGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTCCCCG > NC_002947/1728554‑1728846 | aGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTg < 1:3968965/150‑1 (MQ=255)aGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTg < 1:2439848/150‑1 (MQ=255) gCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTg > 1:3907434/1‑150 (MQ=255) gCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTg < 2:3916165/150‑1 (MQ=255) cATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGc < 1:3994931/150‑1 (MQ=255) cATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGc < 2:3167955/150‑1 (MQ=255) aTCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGc‑‑c > 2:2075675/1‑150 (MQ=255) tCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑Ca > 2:450869/1‑150 (MQ=255) aCCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCGTGGTGGCTGcttcgcg < 2:2916838/150‑7 (MQ=255) aCCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCGTGGTGGCTGcttcgcg < 2:2916861/150‑7 (MQ=255) aCCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACggg < 1:4800792/150‑1 (MQ=255) cccTGGTCGCAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCGTGCCCGCGAAGCAGCCACCGTGGTGGCTGcttcgcgg < 2:3140567/150‑8 (MQ=255) ccTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCa > 2:4180439/1‑150 (MQ=255) tGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATa < 1:288101/150‑1 (MQ=255) gTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACTTATTGGGCATCTGAGCATCTTGTTTCAAGCATTAGGAGCGGGCTTGCCAGCTAAGCAGCCAACACGGTGGCTGC‑‑CACGGCCATAGc < 1:3012353/150‑1 (MQ=255) cGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGccc < 2:2521254/150‑1 (MQ=255) cGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGccc < 2:2521489/150‑1 (MQ=255) gAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCg > 1:2225338/1‑150 (MQ=255) aGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTcgc < 2:193785/150‑1 (MQ=255) gggTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCggg > 2:3370921/1‑150 (MQ=255) ggTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGt > 1:295869/1‑150 (MQ=255) gAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAAc > 1:3227509/1‑150 (MQ=255) tACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCa < 1:1444545/150‑1 (MQ=255) aCGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCAt < 2:1713035/150‑1 (MQ=255) cTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCt > 2:4366470/1‑150 (MQ=255) cTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCt > 2:2827209/1‑150 (MQ=255) cTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCt < 1:3914794/150‑1 (MQ=255) cGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACa < 1:2504152/150‑1 (MQ=255) tGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGa > 1:209876/1‑150 (MQ=255) aGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCgg > 2:425920/1‑128 (MQ=255) aGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCgg < 1:426600/128‑1 (MQ=255) aGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAAc > 2:3346223/1‑150 (MQ=255) aGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAAc < 1:303732/150‑1 (MQ=255) aGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAAc < 2:1302559/150‑1 (MQ=255) ccAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAATCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGc > 1:3458576/1‑150 (MQ=255) ccAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGc > 2:1998860/1‑150 (MQ=255) ccAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGc > 1:1011280/1‑150 (MQ=255) aGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCaa < 1:3665394/150‑1 (MQ=255) aaaGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGc < 2:2041888/150‑1 (MQ=255) aGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCt > 2:1858362/1‑150 (MQ=255) ccTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGc‑c < 1:391848/150‑1 (MQ=255) ccTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGc‑c < 1:4913736/150‑1 (MQ=255) cAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGACGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTTC‑CGttt < 2:3659175/150‑1 (MQ=255) aGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCa < 2:4840657/150‑1 (MQ=255) gCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCat < 1:4509497/150‑1 (MQ=255) gCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCat < 2:4202163/150‑1 (MQ=255) gCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCat < 2:4803269/150‑1 (MQ=255) ccGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCatg < 2:1316377/150‑1 (MQ=255) ccGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGCTTCatg < 1:1148478/150‑1 (MQ=255) ccGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACG‑GCAGGCTTGCTCGTTTctgt < 1:3854792/150‑4 (MQ=39) cGAAGACGTTGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTTGGAGCGGGCTTGCCCGCGAAGCAGCCACCTCGGTGGCTGC‑‑CACGGGCTTAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACG‑GCAGGCTTGCTCGTTTctgta < 2:3734038/150‑5 (MQ=37) gAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCatgat > 2:896318/1‑150 (MQ=255) aaGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCatgatg < 1:1298293/150‑1 (MQ=255) aCGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTAc < 2:1415111/150‑1 (MQ=255) aCGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTAc < 2:2261154/150‑1 (MQ=255) cGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACg < 2:2769385/150‑1 (MQ=255) gTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCGtggtgg < 2:302708/71‑1 (MQ=255) gTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCGtggtgg > 1:302708/1‑71 (MQ=255) tAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGcc > 2:5073714/1‑150 (MQ=255) tAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGcc > 2:5073640/1‑150 (MQ=255) gTGGGCCTCTGAGCCTCGGGTTTCAAGCCGTAGGAGCGGGCGTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAg < 1:156826/150‑1 (MQ=255) gggCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGt < 2:3820611/150‑1 (MQ=255) ccTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGAt > 1:766943/1‑150 (MQ=255) ctctGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGAtt > 2:3604160/1‑150 (MQ=255) ctGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTc < 1:669039/150‑1 (MQ=255) tGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTcc > 2:2101728/1‑150 (MQ=255) tGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTcc > 2:3062354/1‑150 (MQ=255) tGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTcc > 2:506740/1‑150 (MQ=255) ccTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCtt < 1:4274093/150‑1 (MQ=255) ctctGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTc < 1:3824557/150‑1 (MQ=255) ctctGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTc > 2:1435341/1‑150 (MQ=255) tctGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCa < 1:2863057/150‑1 (MQ=255) tctGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCa > 1:2931433/1‑150 (MQ=255) tGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCAcc > 2:2684801/1‑150 (MQ=255) gTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGt > 2:3789229/1‑150 (MQ=255) gggcAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTGCAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTc > 1:4827286/4‑150 (MQ=255) ttCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCg < 1:3519570/150‑1 (MQ=255) tCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCgg > 1:1021288/1‑150 (MQ=255) cAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGgc < 1:4180439/150‑1 (MQ=255) cAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGgc < 1:1998860/150‑1 (MQ=255) aaGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATGTCCTCTTCACCGTCGgcg > 2:855026/1‑150 (MQ=255) gTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGAt > 1:514256/1‑150 (MQ=255) gAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCgg > 1:2977425/1‑150 (MQ=255) aGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGa > 1:5032438/1‑150 (MQ=255) gCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGAc < 1:450869/150‑1 (MQ=255) tttacccGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGc > 1:488056/5‑150 (MQ=255) tttacccGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGc > 1:3042927/5‑150 (MQ=255) gCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGt < 2:3058281/150‑1 (MQ=255) ccGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCa > 1:4109748/1‑150 (MQ=255) cgcgAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCACGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAg > 1:2733271/1‑150 (MQ=255) cgcgAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAg > 2:1396471/1‑150 (MQ=255) ccgtggcagcCACCGTGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGc > 2:1782609/6‑150 (MQ=255) ggcagcCACCGTGGTGGCTGCTTCGCGGGCA‑AGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTGTCATGGTGTACGCCCGGTGATTTCCTCTTCACCGGCGGCGCTGATGCGGACCCAGCGGTCAGCAtc > 1:4354493/2‑150 (MQ=37) cagcCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCAtcttc < 2:1122344/150‑1 (MQ=255) gcCACCGTGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATcttctt > 2:1645492/1‑150 (MQ=255) ccaccaCGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCttcttc > 2:629805/1‑150 (MQ=255) caccacGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGAGGTATGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTcc > 2:597087/1‑150 (MQ=255) accacGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCatg > 1:2612887/1‑81 (MQ=255) ccacGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTcccc > 1:2868233/1‑150 (MQ=255) cacGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTCCCCg > 2:3910187/1‑150 (MQ=255) | AGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGC‑‑CACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGC‑CGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTCCCCG > NC_002947/1728554‑1728846 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |