| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,458,832 | C→A | 9.2% | intergenic (+118/‑63) | gapB → / → PP_2150 | glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,458,832 | 0 | C | A | 9.2% | 278.7 / 17.4 | 106 | intergenic (+118/‑63) | gapB/PP_2150 | glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein |
| Reads supporting (aligned to +/- strand): ref base C (47/47); new base A (6/4); total (53/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.20e-01 | |||||||||||
Only 100 of 109 total aligned reads displayed.
CTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATG > NC_002947/2458683‑2458981 | cTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGc < 2:4104099/150‑1 (MQ=255) tGGTGTGAGCCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCt < 1:4592365/150‑1 (MQ=255) ggTGTGAGCCCGCCAGCGTTTCCACACTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCt < 2:5098524/150‑1 (MQ=255) ggTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGGAAGGCAATGAAAAAACGGGAACCCTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTg < 2:4373812/150‑1 (MQ=255) gtgtGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGc > 1:4519635/1‑150 (MQ=255) aaCCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTg < 1:2828765/150‑1 (MQ=255) cccGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTa < 1:1442288/150‑1 (MQ=255) cccGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTa < 2:3117626/150‑1 (MQ=255) cccGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTa < 1:3676477/150‑1 (MQ=255) cccGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTa < 2:4565558/150‑1 (MQ=255) ccGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAg < 2:1949759/150‑1 (MQ=255) ccGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCGACAGGATTATCGCTGCCCCTGTAg > 2:770752/1‑150 (MQ=255) gCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCTGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGa < 1:3570742/150‑1 (MQ=255) gCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGa < 2:3549130/150‑1 (MQ=255) gCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGa < 1:3570716/150‑1 (MQ=255) gCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAAACCGCTCCTACAGGGTTATCGCTGCCCCAGTAGGa > 2:251077/1‑150 (MQ=255) gCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCgg < 2:1424029/150‑1 (MQ=255) gCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCgg < 2:174100/150‑1 (MQ=255) gCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCgg < 2:215979/150‑1 (MQ=255) cGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCggg < 1:4906362/150‑1 (MQ=37) cGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCggg < 2:2998549/150‑1 (MQ=255) gTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TATTTTTTTATTCTGAATGTGTGTTGTCGGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGt < 2:1473730/150‑1 (MQ=18) tttCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCgggat < 1:95862/150‑3 (MQ=255) tttCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGtt < 1:601788/150‑1 (MQ=25) aCGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTGAAACCGCACCTACCGGAGTATGGCTGACCCAGGAGGGGCGGGTTTTcc > 1:2198102/1‑150 (MQ=37) gCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTTAAACCGCTCCTACAGGATTATAGCTGCCCCTGTAGGAGCGGGTTTACCcgc > 2:3970283/1‑150 (MQ=255) gtttCGCTTGTATGGAAATTAAAAAACGGGAACCTTGGGTTTCCCT‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGGGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGaa < 1:2002228/148‑1 (MQ=38) gatgcccTTGTAAGGCAATGAAAAAACGGGAACCGCCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTGGCGCGGGTAAACCCGCTCCCCCAGGATTATCGCGGCCCCTGTAGGAGCGGGTTTACCCGCGaa < 2:4296996/144‑1 (MQ=38) aTTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTGGGGTTCCTG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACCGTATTATCGCTGCCCCTTTTGGAGCGGTTTTACCCGCGAag < 1:525832/150‑1 (MQ=38) aTTCGCTTGTAAGGCAATGAAAAAACGGCAACATTCGGGTTCCTG‑TTTTTTTTTATACTGAATGTGTGTTGTCAGTGCCGGCCCTTACGCGGGTAAACCCGATCCTACAGGATTATCGCTCCCCCTGTAGGAGCGGGTTTACCCGCGAag < 1:1910486/150‑1 (MQ=38) gtCGCTTGTACGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAaga < 2:5038176/149‑1 (MQ=255) tcgcaagTAAGGCAATGAAAAAACGGGAACCATCGCGATCCCC‑TTTTTTTATATTCGGAATGTGTGGTGACAGAGCCGGCCCTTTCGCGGGTAAAACCGCTCCGACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAagag > 2:5078960/7‑150 (MQ=37) tCGCTTGTACGGCAATTAAAAAAGGGTAACCTTCGGGTTCCCT‑TTTTTTTTTATTCTGACTGTGTGTTGTCAGTGCGGGCCCTTTCGCGGTTAAACCCGCTCCTACCGTTTTATCGCTGCCCCTGTAGGAGGGGTTTTACCCGCGAagag < 2:1501884/150‑1 (MQ=255) tCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAagag > 2:5078986/1‑150 (MQ=255) ttGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCGACAGGCATATCGCTGCCCCGGTAGGAGCGGGTTTACCCGCGAAGAGGCCa > 2:1365054/1‑150 (MQ=255) aGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGGTTACCCGCGAAGAGGCCCGCAcc > 2:822934/1‑150 (MQ=255) aGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGGTGTCAGTGCCGGCCCTTTCGCGGGTAAAACCGCTCCAACAGGATTATCGCTGCCCCGGTAGGAGCGGGGTTACCCGCGAAGAGGCCGGCAcc > 2:2230204/1‑150 (MQ=38) gCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCCCACCAACAGGATTAAAGCTGCCCCAGTAGGAGCGGGTTTAACCGCGAAGAGGCCCGCACCgg > 1:4902527/1‑150 (MQ=255) ataCGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGAGGGTAAACACGAGCCTAAAGGATTATCGCTGACCCTGTAGGAGCGGGTTTAACCGCGAAGAGGCCAGCACCGGCAACCgaga > 2:3639184/3‑150 (MQ=38) aaaCGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCGACAGGCTTATAGCGGCCCCGGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCcaga > 2:1346952/1‑150 (MQ=38) aCGGGACCCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCGCCGCCAGGCGTATCGCGGCCCCGGGAGGAGCCGGGTTACCCGCGCCGAGGCCCGCACCGGCACCCgcgcca > 2:4376351/1‑145 (MQ=255) cGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAAc < 2:3380872/150‑1 (MQ=255) cGGGAACCTTCGGGTGCCCT‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTAACGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAAc < 2:228353/150‑1 (MQ=255) gggAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCCCTCCTACAGGAGTAACGCAGCCCCAGTAGGCGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCCACCCAGAAAcc > 2:892300/1‑150 (MQ=38) aaCCTTCGGGTTCCCGTTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAAccca > 2:3745283/1‑149 (MQ=255) ttggggTTCCTT‑TTTTTTTTTTTTTTTATTGTGTGTTGCCTGGGCCGGCCGTTTCGGGGGTAACCCCGCTCCTACCTTTTTACGGGTGCCCGTGTCGGGGGGGTTTTCCCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACtgt < 1:4345695/147‑1 (MQ=255) ttCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAAACCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACagt > 2:1927645/1‑150 (MQ=255) ttCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAAACCGCACCAACACGATTAAAGCTGCCCCAGTATGAGCCGGTTTAACCGCGAACAGGCCACCACCCGCAACCCAGAAACCCAACtgt > 2:1927636/1‑150 (MQ=255) ggTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGAATAACGCTGCCCCAGTAGGAGCCGGTTTACACGCCAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTgcgc > 2:281590/1‑150 (MQ=39) ccG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTATCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCCAGAAACCCTACAGTGCGCACAGc > 2:3820725/1‑150 (MQ=255) g‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTACTACAGGATTATCGCAGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCAAATTTGCGCACAcccc > 2:4410635/1‑150 (MQ=38) ttttttttttTATTATTTTGTTTTGTCTGTGCGGGCCCTTTGGGGGGAAAACCCGCTCCTACAGGTTTTTCGGTGCCCGGGTTGGTGGGGTTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTa < 1:1971126/150‑1 (MQ=255) ttttttttttCTGATTGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGTTTTATCGCTCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTAc < 1:2835905/150‑1 (MQ=38) ttttttATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACt < 2:4594105/150‑1 (MQ=255) tttttATTCTGATTGTGTGTTTTCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTATCGTATTATCGCTGCCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTg < 1:5123258/150‑1 (MQ=38) ttttATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCCCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCCAGAAACCCTACAGTGCGCACACCCCAACAGt > 1:4652693/1‑150 (MQ=38) tCTGATTGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGAAAACCCGCTCCTACCGTTTTATCGCTGCCCCTGTAGGAGGGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTc < 1:3228878/150‑1 (MQ=39) tGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAAACCGCTCCTACAGGATTATCGCTGCCCCAGTAGGAGCGGGTTTACCCGCGAAGAGGCCACCACCGGCAACCGAGAAACCCGACTGTGCGCACAGCCCTACAGTTCATTatg > 2:3012536/1‑150 (MQ=38) gAATGTGTGTTGTCTGTGCCGGCCCTTGCGCGGGTAAACCCGCTCATACAGGATTATCGCTGCCCCTGTAGGAGCGGTTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTctgc < 2:1700386/150‑1 (MQ=255) tgtgttTTCACAGTCCCGGCCCATCCCCGGTAAAACCCCCTCCAACAGCATTAACCCTCCCCCTCTACGAGCGGTTTAACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCtgctgc < 1:2702380/150‑1 (MQ=255) tgtgtgTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGCTTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACCGGCAACCGAGAAACCCGACAGTGCGCACACCCCAACTGGTCATTCtgctgc > 1:4235339/1‑150 (MQ=38) tgtgtgTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCCACCGAGAACCCCTACGGTGCGCACAGCCCTACTGTTCATTGtgctgc > 1:4235400/1‑150 (MQ=255) ggtgtgtTGTCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGTATTATCGCTGCCCCTGTTGGAGCGGTTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCtgctgc < 1:3745283/149‑1 (MQ=255) tgttgtCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTCGGAGCGGGTTTACCCGCGAAGAGGCCCGCACCCGCAACCGAGAAACCCTACGGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACt > 2:4768540/1‑150 (MQ=255) gttgtCTGTGCCGGCCTTTTGGGGGGTAAACCCGCTCCTACTGTTTTTGGGCTCCCCGTTTTGGTGGGGTTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTc < 1:684326/150‑1 (MQ=255) gttgcCAGTGCCGGCCCTTTCGCGGTAAACCCCGCTCCAACCGCTTTATCGCGGCCCCTGTTGGTGCGGTTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTc < 1:684230/150‑1 (MQ=255) gtCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCGGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCCACCCAGAAACCCTCCAGTGCGCACAGCCCACCAGTTCATTCTGCTGCTAAACAcc > 2:3846858/1‑150 (MQ=37) cGGCCCTTTCGCGGGTAAACCCGCGCCTACAGGATTATCGCTGCCCCGGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCACCCGCAACCGAGAAACCCGACTGTGCGCACAGCCCTACGGTTCATTCTGCTGCTACTCACCCCCAGCaa > 2:2237657/1‑150 (MQ=38) cGGCCCTTTCGCGGGTAAACCCCCGCCGACAGGATTATAGCTGCCCCTGTTGGAGCGGGGTTACCCCCCAAGAGGCCAGCACCGGCCACCGCGAAACCCAACGCTGCGCCCAGCCCTACTGTTCATTCTGCAGCTACTCACCGCCAGCaa > 2:2237448/1‑150 (MQ=255) ggCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCAACAGTTCATTCTGCTGCTACTCACCGCCTGCAAc > 2:2477067/1‑150 (MQ=255) ggCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTAATTCTGCTGCTACTCACCGCCTGCAAc > 2:3389305/1‑150 (MQ=255) ccTTTCGCGGGTAAACCCGCTCCTACAGTTTTATCGCGGCCCCTTTTGGAGCGGTTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCaa < 1:619954/150‑1 (MQ=39) ttCGCGGGTAAACCCGCTCCTACAGGAATATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACCGAGAAACCCTACTGTGCGCACAGCCCAAAAGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGc > 2:4204411/1‑150 (MQ=38) aaCCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGTTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTgg < 1:1998887/150‑1 (MQ=255) aCCCGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGa > 1:1550590/1‑150 (MQ=18) aCCCGCCCATACTGTTTTCTCGCTGCCCCTGTTGGTGCGGTTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGa < 1:770752/150‑1 (MQ=255) ccGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAACCCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAgc > 2:3674791/1‑150 (MQ=37) ccGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAgc > 2:2563303/1‑150 (MQ=37) ccGCTCCTACAGGGGCAGCGATAATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAgc > 2:182468/1‑150 (MQ=25) ccGCTCCTACAGGGGCAGCGATAATCCTGTACGAGCGGGTTTACCCGCGAAAGGGCCAGCACCGGCAACCCAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATACTGCTGCTACTCACCGCCTCCAACCAAGGCCCCACCCTGGAgc > 2:182483/1‑150 (MQ=21) ccGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAgc > 1:2433071/1‑150 (MQ=255) ccGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCAGCAACCAAGGCCCCACCCTGGAgc > 2:4504271/1‑150 (MQ=255) cGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTctg > 2:872027/1‑109 (MQ=255) cGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTctg < 1:872027/109‑1 (MQ=255) gCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAgcgc > 1:1505636/1‑150 (MQ=255) gCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAgcgc > 1:1505597/1‑150 (MQ=255) tCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCAGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCt > 2:671551/1‑150 (MQ=255) cTACAGGTTTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTgg < 2:4902527/150‑1 (MQ=255) aCAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGggt > 2:3998943/1‑150 (MQ=255) cggtttATCGCTGCCCCTGTAGGAGCGGTTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCAGGCGCTCCAGggtgg < 2:1303715/146‑1 (MQ=39) aGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCACCCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCAGTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGggtgg > 1:660654/1‑150 (MQ=255) ggATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCGACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCAGGCGCTCCAGggtggg < 2:4519635/150‑2 (MQ=39) gATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTc > 1:2162172/1‑150 (MQ=255) gATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTc > 1:2162167/1‑150 (MQ=255) tttATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTcc < 1:4560953/149‑1 (MQ=255) aTTATCGCTGCCCCTGTTGGAGGGGTTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTcc < 1:1052839/150‑1 (MQ=255) tATCGCTGCCCCTGTTGGAGCGGTTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGa < 1:3970283/150‑1 (MQ=255) gCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCAt > 2:4952833/1‑150 (MQ=255) cTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGAcacag > 2:1978726/1‑146 (MQ=255) cTGCCCCTGTAGGAGCAGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATg < 1:251077/150‑1 (MQ=255) | CTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATG > NC_002947/2458683‑2458981 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |