Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,648,239 A→T 6.4% D540V (GAC→GTC)  PP_4954 → membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,648,2390AT 6.4% 574.4 / 20.7 173D540V (GAC→GTC) PP_4954membrane protein
Reads supporting (aligned to +/- strand):  ref base A (102/60);  new base T (9/2);  total (111/62)
Fisher's exact test for biased strand distribution p-value = 3.31e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01

Only 100 of 174 total aligned reads displayed.

ATACACCCTGGCCACTGCCGCGATCACCCTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCTGGCCCGGCGCAATGCCCACAACGCT  >  NC_002947/5648090‑5648384
                                                                                                                                                     |                                                                                                                                                 
  acacCCTGGCCACTGCCGCGATCACCCTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCACGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACt                                                                                                                                                 <  1:4878879/150‑1 (MQ=255)
    acCCTGGCCACTGCCGCGATCACCCTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTgg                                                                                                                                               <  1:2968367/150‑1 (MQ=255)
    acCCTGGCCACTGCCGCGATCACCCTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTgg                                                                                                                                               <  1:2440058/150‑1 (MQ=255)
      ccTGGCCACTGCCGCGATCACCCTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCa                                                                                                                                             >  1:3810038/1‑150 (MQ=255)
        tGGCCACTGCCGCAATCACCCTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAgg                                                                                                                                           >  1:3953019/1‑150 (MQ=255)
         ggCCACTGCCGCGATCACCCTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAggg                                                                                                                                          <  2:3051753/150‑1 (MQ=255)
          gCCACTGCCGCGATCACCCTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGc                                                                                                                                         <  2:1559694/150‑1 (MQ=255)
              cTGCCGCGATCACCCTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGAc                                                                                                                                     <  1:1464995/150‑1 (MQ=255)
               tGCCGCGATCACCCTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACg                                                                                                                                    >  2:4130427/1‑150 (MQ=255)
                gCCGCGATCACCCTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACgg                                                                                                                                   >  1:286143/1‑150 (MQ=255)
                  cgcgATCACCCTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCATGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCt                                                                                                                                 <  2:4835703/150‑1 (MQ=255)
                     gATCACCCTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGaa                                                                                                                              <  2:4519252/150‑1 (MQ=255)
                         aCCCTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAg                                                                                                                          >  2:3167758/1‑150 (MQ=255)
                         aCCCTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAg                                                                                                                          >  2:228570/1‑150 (MQ=255)
                         aCCCTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAg                                                                                                                          <  2:3758552/150‑1 (MQ=255)
                         aCCCTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGACGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAg                                                                                                                          >  2:4333815/1‑150 (MQ=255)
                           ccTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGgc                                                                                                                        >  1:2644981/1‑150 (MQ=255)
                           ccTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGgc                                                                                                                        >  2:1426458/1‑150 (MQ=255)
                              gATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCt                                                                                                                     >  2:4794566/1‑150 (MQ=255)
                              gATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCt                                                                                                                     >  2:3378391/1‑150 (MQ=255)
                              gATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCt                                                                                                                     >  2:3927013/1‑150 (MQ=255)
                              gATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCt                                                                                                                     >  2:4794373/1‑150 (MQ=255)
                              gATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCATGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCt                                                                                                                     >  2:4455057/1‑150 (MQ=255)
                               aTGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTg                                                                                                                    <  1:4994781/150‑1 (MQ=255)
                                   tGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACa                                                                                                                            <  2:1301638/138‑1 (MQ=255)
                                   tGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACa                                                                                                                            >  1:1301638/1‑138 (MQ=255)
                                      tGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATa                                                                                                             >  2:4992122/1‑150 (MQ=255)
                                        ttCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATAcc                                                                                                           >  1:2822670/1‑150 (MQ=255)
                                        ttCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTCCCTGCCAGTcaggcaggaacag                                                                                                                                      >  1:2875769/1‑118 (MQ=255)
                                        ttCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTCCCTGCCAGTcaggcaggaacag                                                                                                                                      <  2:2877537/123‑6 (MQ=255)
                                         tCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATAccc                                                                                                          <  1:1831942/150‑1 (MQ=255)
                                         tCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATAccc                                                                                                          <  2:3457735/150‑1 (MQ=255)
                                           tGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTg                                                                                                        <  2:286143/150‑1 (MQ=255)
                                           tGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTg                                                                                                        >  1:2343705/1‑150 (MQ=255)
                                              ttCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGcc                                                                                                     >  1:3258383/1‑150 (MQ=255)
                                              ttCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGcc                                                                                                     >  1:1500936/1‑150 (MQ=255)
                                                      gATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAg                                                                                             >  2:1268252/1‑150 (MQ=255)
                                                      gATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCACTGGCCAATACCCTGGCCTGCGCCAg                                                                                             >  2:1862375/1‑150 (MQ=255)
                                                       aTCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGc                                                                                            <  2:1943691/150‑1 (MQ=255)
                                                       aTCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGc                                                                                            >  2:2378284/1‑150 (MQ=255)
                                                           gCGATGGCTACGGCCTGTTCCTACCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCgtgt                                                                                        >  1:839316/1‑150 (MQ=255)
                                                                 gCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTgc                                                                                  <  2:3133231/150‑1 (MQ=255)
                                                                   tACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTgcgc                                                                                >  1:4286863/1‑150 (MQ=255)
                                                                   tACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTgcgc                                                                                >  1:3575294/1‑150 (MQ=255)
                                                                   tACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTgcgc                                                                                >  2:4235310/1‑150 (MQ=255)
                                                                       gCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGa                                                                            <  1:3167072/150‑1 (MQ=255)
                                                                        ccTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGAt                                                                           >  1:3424834/1‑150 (MQ=255)
                                                                        ccTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGAt                                                                           >  1:4450561/1‑150 (MQ=255)
                                                                          tGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCa                                                                         >  2:14423/1‑150 (MQ=255)
                                                                            ttCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATCCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATg                                                                       <  2:3485911/150‑1 (MQ=255)
                                                                              ccTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATgca                                                                     <  2:2306073/150‑1 (MQ=255)
                                                                               cTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATgcag                                                                    >  1:276470/1‑150 (MQ=255)
                                                                                 gCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATgcagca                                                                  <  2:2840980/150‑1 (MQ=255)
                                                                                      gcCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATg                                                             <  1:3702490/150‑1 (MQ=255)
                                                                                       ccTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGc                                                            <  2:3549459/150‑1 (MQ=255)
                                                                                         tGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGccc                                                          >  1:548686/1‑150 (MQ=255)
                                                                                           ttCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCAc                                                        >  2:170387/1‑150 (MQ=255)
                                                                                              gATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGTCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGc                                                     >  1:2702980/1‑150 (MQ=255)
                                                                                              gATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGc                                                     >  1:877300/1‑150 (MQ=255)
                                                                                              gATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGc                                                     >  1:4561768/1‑150 (MQ=255)
                                                                                               aTACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCa                                                    >  2:3678488/1‑150 (MQ=255)
                                                                                                tACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCaa                                                   <  1:4130427/150‑1 (MQ=255)
                                                                                                tACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCaa                                                   <  1:459191/150‑1 (MQ=255)
                                                                                                   ccTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGGACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAgcg                                                >  2:4071606/1‑150 (MQ=255)
                                                                                                   ccTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAgcg                                                >  1:443750/1‑150 (MQ=255)
                                                                                                   ccTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAgcg                                                >  1:3059150/1‑150 (MQ=255)
                                                                                                   ccTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAgcg                                                >  1:5080504/1‑150 (MQ=255)
                                                                                                     tGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGcgcg                                              >  2:1019680/1‑150 (MQ=255)
                                                                                                      ggTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGcga                                             >  1:661084/1‑150 (MQ=255)
                                                                                                       gTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGcgac                                            <  1:1591819/150‑1 (MQ=255)
                                                                                                       gTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGcgac                                            <  2:2023234/150‑1 (MQ=255)
                                                                                                             aGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTg                                      >  1:2701318/1‑150 (MQ=255)
                                                                                                             aGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTg                                      >  1:148619/1‑150 (MQ=255)
                                                                                                               ccTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGc                                    >  1:2407423/1‑150 (MQ=255)
                                                                                                               ccTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGc                                    >  1:2407398/1‑150 (MQ=255)
                                                                                                               ccTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGGATGCCCACGGCCAGCGCGACGACCTGGc                                    >  1:4781951/1‑150 (MQ=255)
                                                                                                                  gATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTa                                 >  1:3081156/1‑150 (MQ=255)
                                                                                                                   aTTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTAc                                >  1:3205524/1‑150 (MQ=255)
                                                                                                                        cATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGTAGCAGTATGCCCACGGCACGCGCGACGACCTGGCCTACCGCCt                           >  2:592960/1‑150 (MQ=255)
                                                                                                                        cATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCt                           >  2:3421269/1‑150 (MQ=255)
                                                                                                                        cATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCt                           >  2:4371533/1‑150 (MQ=255)
                                                                                                                        cATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCt                           >  2:2174491/1‑150 (MQ=255)
                                                                                                                         aTTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCTg                          >  1:38028/1‑150 (MQ=255)
                                                                                                                             ttGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCTGGccc                      >  2:91621/1‑150 (MQ=255)
                                                                                                                             ttGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCTGGccc                      >  1:1837190/1‑150 (MQ=255)
                                                                                                                                cAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCTGGCCCGgc                   <  2:1885260/150‑1 (MQ=255)
                                                                                                                                cAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCTGGCCCGgc                   <  1:2715569/150‑1 (MQ=255)
                                                                                                                                     ttcctgttcctgCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCTGGCCCGGCGCAAt              >  1:2144512/1‑150 (MQ=255)
                                                                                                                                     gtcctgttcctgCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCTGGCCCGGCGCAAt              <  1:3643755/149‑1 (MQ=255)
                                                                                                                                          gttcctgCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCTGGCCCGGCGCAATGCCca         <  2:2781556/150‑1 (MQ=255)
                                                                                                                                           ttcctgCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCTGGCCCGGCGCAATGCCcac        <  2:509604/150‑1 (MQ=255)
                                                                                                                                           ggcctgcctgACTGGCAGGGCCGACGGCTGCACACGGCGCGGGCCACTACCCGGGCCCGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTCGGCCCCCGGCAAGCGCGCCGCCCCGCCCGACCCCCGGGCCCGGCGCAATGCCcac        <  2:509602/148‑1 (MQ=255)
                                                                                                                                            tcctgCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCTGGCCCGGCGCAATGCCcaca       >  1:97578/1‑150 (MQ=255)
                                                                                                                                            tcctgCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCTGGCCCGGCGCAATGCCcaca       >  1:4022734/1‑150 (MQ=255)
                                                                                                                                            ccctgccagTCAGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCTGGCCCGGCGCAATGCCcaca       >  1:1353445/2‑150 (MQ=255)
                                                                                                                                              ctgcctgACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCTGGCCCGGCGCAATGCCCACAAc     <  2:2948225/150‑1 (MQ=255)
                                                                                                                                              ctgccagTCAGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCTGGCCCGGCGCAATGCCCACAAc     >  1:593258/1‑150 (MQ=255)
                                                                                                                                              ctgccagTCAGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCTGGCCCGGCGCAATGCCCACAAc     >  1:593118/1‑150 (MQ=255)
                                                                                                                                               tgcctgACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCTGGCCCGGCGCAATGCCCACAACg    <  1:1752015/150‑1 (MQ=255)
                                                                                                                                                gcctgACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCTGGCCCGGCGCAATGCCCACAACGc   >  1:716802/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                 
ATACACCCTGGCCACTGCCGCGATCACCCTGATGGTGCTGTTCTGCTTCAACCAGATCGGCGATGGCTACGGCCTGTTCCTGCCGCGCCTGTTCGATACCCTGGTCGGCAGCCTGATTGCCATTCTTGCAGTGTTCCTGTTCCTGCCTGACTGGCAGGGCCGACGGCTGAACAAGGCGCTGGCCAATACCCTGGCCTGCGCCAGCGTGTACCTGCGCCAGATCATGCAGCAGTATGCCCACGGCAAGCGCGACGACCTGGCCTACCGCCTGGCCCGGCGCAATGCCCACAACGCT  >  NC_002947/5648090‑5648384

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑