| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,860,828 | A→T | 6.2% | intergenic (+28/+110) | PP_5134 → / ← PP_5135 | hypothetical protein/ABC transporter substrate‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,860,828 | 0 | A | T | 6.2% | 266.0 / 2.3 | 94 | intergenic (+28/+110) | PP_5134/PP_5135 | hypothetical protein/ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base A (35/50); new base T (2/3); total (41/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTT‑A‑CCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGC > NC_002947/5860681‑5860975 | ttGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTaaa < 2:2485656/150‑1 (MQ=255) ccGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCATGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGGAAAccc > 1:3099457/1‑150 (MQ=255) ccGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAAccc < 1:2197720/150‑1 (MQ=255) cGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGCGGGGTAAAccc > 1:1067715/1‑150 (MQ=255) cGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCg < 1:2036964/150‑1 (MQ=255) ggAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGc < 1:4612309/150‑1 (MQ=255) ggCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTTTACCCGcgaa < 1:1405353/150‑4 (MQ=255) ggCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTTTACCCGcgaa < 1:1405418/150‑4 (MQ=255) cGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTTTACCCGcgaaga < 1:5109621/150‑6 (MQ=255) cGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTa < 1:3953923/150‑1 (MQ=255) gTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGggc < 1:3828832/150‑1 (MQ=255) gTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGggc < 1:2054050/150‑1 (MQ=255) tCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAAACCGCAGCGACGggcg > 1:3131742/1‑150 (MQ=255) cAAAGCGCGGGTGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACgggggg > 1:4206795/1‑150 (MQ=255) aaaGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCGCTTCGC‑GGGGGAACCCGCGCCAAACggcggc > 1:1522186/1‑150 (MQ=255) aaaGCGCGGGCGCACCCGCAGTGGTCCACCCAGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGggcggc < 2:2648521/150‑1 (MQ=255) cactgcgGGTGCGCCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTGGC‑GGGTAAAACCCCGACGACGggcgggc > 1:1093017/5‑148 (MQ=255) aaGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGcc < 2:3440917/150‑1 (MQ=255) gcgGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTg < 1:2051509/150‑1 (MQ=255) gcgGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTg < 2:2270333/150‑1 (MQ=255) gcgGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTg < 2:2737572/150‑1 (MQ=255) gcgGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTg < 2:3008782/150‑1 (MQ=255) gcgGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTg < 1:1219893/150‑1 (MQ=255) gcgGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTg < 1:1845717/150‑1 (MQ=255) gcgGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTg < 1:1845685/150‑1 (MQ=255) cgGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGt < 1:676110/150‑1 (MQ=255) gggCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTa < 1:5013216/150‑1 (MQ=255) gggCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTa < 2:4921068/150‑1 (MQ=255) ggCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTAc < 1:1211315/150‑1 (MQ=255) aCCCGCGGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAacc‑a > 1:3800633/1‑150 (MQ=255) ccGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAacc‑acc < 2:4355011/150‑1 (MQ=255) ccGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAACCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAacc‑acc < 1:3724171/150‑1 (MQ=255) aGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGAtg < 2:3860143/150‑1 (MQ=255) gTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGAtgt < 1:83112/150‑1 (MQ=255) ggTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGc < 2:4869746/150‑1 (MQ=255) ccACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTc < 1:5110980/150‑1 (MQ=255) ccACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTc < 1:5110854/150‑1 (MQ=255) ccACCCTGAATCCCGCGGCCAAGCTGAAACAGGCTGAGCGGCAGGAGCAGATGGAGGCGCTGGTTTCACAGATTTGACCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTc < 2:5016521/150‑1 (MQ=255) cACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTcc < 1:384283/150‑1 (MQ=255) cTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCGCCTACGGGCGGCCGGTGTACAACC‑ACCGATGTGCGTccacca > 2:3402514/1‑150 (MQ=255) tGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTGGC‑GGGGTGAGCAGCTCGGAGGGGGGGGCGTTGTTGGACC‑ACCCGTGTGTGTccaccac > 1:4005303/1‑150 (MQ=255) tGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTccaccac < 1:536193/150‑1 (MQ=255) tGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAAACCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCCATGTGCGTccaccac > 2:4837940/1‑150 (MQ=255) tGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTAGC‑GGGTGAACCCCCGCCGACCGGCGGCCGGTGTACAAAA‑AACCAAGTGCGTccacccc > 1:4459439/1‑148 (MQ=255) tGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCGCTTCGC‑GGGTGAACCCCCGCCAACGGGCGGCCGGTGTGCAACC‑ACCCAAGTGCGTccaccac > 1:1581662/1‑150 (MQ=255) gAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTccaccacc > 2:3080621/1‑150 (MQ=255) ggggCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCgg < 2:1575670/150‑1 (MQ=255) gggCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGc < 2:4149656/150‑1 (MQ=255) gggCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGc < 1:4907899/150‑1 (MQ=255) ccAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGCGTa < 1:4017054/150‑1 (MQ=255) ccAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGCGTa < 2:2904286/150‑1 (MQ=255) ccAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGCGTa < 1:2084563/150‑1 (MQ=255) ccAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGCGTa < 1:3716292/150‑1 (MQ=255) cAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGCGTAg < 1:4301981/150‑1 (MQ=255) cAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGCGTAg < 1:1133501/150‑1 (MQ=255) aGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCt < 2:4498524/92‑1 (MQ=255) aGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCt > 1:4498524/1‑92 (MQ=255) gCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAAACCCCACCGACCGGCGGCCGTTGTTCCAAC‑ACCCATGTGCGTCCACCACCAAACCCGCGGACGAg > 2:96350/1‑150 (MQ=255) cTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTAAGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATACGGCGTAGGAGc > 2:1207561/1‑150 (MQ=255) aaTCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCggg < 2:3800633/150‑1 (MQ=255) aaTCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCggg < 1:3540264/150‑1 (MQ=255) aaTCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCggg < 1:3300534/150‑1 (MQ=255) aaTCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCggg < 1:3300529/150‑1 (MQ=255) tCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTAGC‑GGGGGGACCCCCGCCGCCGGGCGGCCGGTGTACAACC‑ACCGCGGTGGGTCCCCCACCCAACCCGCGGGGGGGCggggg > 1:2402709/1‑148 (MQ=255) gCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAAACCGCTCCTACGGGTGGCCTTTGTACAAAC‑ACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTT‑A‑cc > 2:4217643/1‑150 (MQ=255) cgggtggAGCAGTTGGCGGCGCTGGTTTCACTTTTTTGACCACGCCGGGTG‑GGCGTCTTGGC‑GGGTAAACCCGGTCGTTCGGGCGGCCTTTTTACAACC‑ACCGATGTGCGTCCACCACAAATCCGGCTTTGGAGCGGTTTT‑A‑CCCGCGaa < 2:2991025/145‑1 (MQ=255) cGGCAGGAGCAGGTGGCGGCGCTGGTGCCACAGATTTGCGCCAGCTGGGTT‑GCCCTCTTCGC‑GGTTAACCCCGCGCCTCCGGCGGGCCTGTGTACAACC‑ACCGATGTGCGGCCACCACCAATCCGGCGTAGGAGCGGTTTT‑A‑CCCGCGaa < 2:2990821/150‑1 (MQ=255) ggAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTAAGGGCGGCCGTTGTACAACC‑ACCGAAGTGCGTCCACCAACAAACCCGCGTAGGCGCGGGTTT‑A‑CCCGCGAAGAGGc > 2:267688/1‑150 (MQ=37) gcgctgTTGGCGCCGCTGTTTCCACACAGTTGCGCCCGCTGGGTG‑GGCGCGTGCGG‑GGGAAAACCCGCACCCCCGGGCGGCCTTTGAACCCCC‑ACCGATGTGGGACCACCACCAACCCGGCGTAGGCGGGGGTTT‑A‑CCCGCGAAGAGGcc < 2:4315310/145‑1 (MQ=255) ttGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGGAAACCCCCACCAAACGGCGGCCGGTGTTCAACC‑CCCCCAGTGCGTGCCCCCCCAAAACCGCGGAGGAGCCGGGTT‑A‑ACCCCCAAGAGGCCCAcccc > 2:209582/1‑149 (MQ=255) ggAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCCCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATACGGCGGAGGAGCGGGTTT‑A‑CCCGCCAAGAGGCCGACCCTGc > 2:2099540/1‑150 (MQ=255) gcTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAAAC‑ACCGATGTGCGTCCACCACCAAACCGGCGTAGGAGCGGGTTT‑A‑CCCGCGAACAGGCCGACCCTGCAAAAGt > 2:754016/1‑150 (MQ=255) gcTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCCCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTT‑A‑CCCGCGAAGAGGCCGACCCAGCAAAAGt > 2:753988/1‑150 (MQ=255) gcTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCCCGCCAACGGGCGGCCGTTGTACAACC‑ACCCAAGGGCGTCCCACACCAAACCCGCGTAGGAGCGGGGTT‑A‑CCCGCGAAGAGGCCGCCCCGGCAAAAGt > 2:2250831/1‑150 (MQ=255) tGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCCCTCCAACGGGCGGCCGTTGTACAACC‑ACCGATGTGCGTCCACCACCAATACGGCGTAGGAGCGGGTTT‑A‑CCCCCGAAGAGGCCGACCCAGCAATAGTGa > 2:1997830/1‑150 (MQ=39) gTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCGCCTACGGGCGGCCGTGGTACAACC‑CCCGATGTGCGTCCACCACCAATCCGGCGGGGGAGCGGGTTT‑A‑ACCGCGAAGAGGCCGACCCAGCAAGAGTGAAg > 2:115197/1‑150 (MQ=37) gTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAAACCGCGCCAACGGGCGGCCGTTGTTCAACC‑CCCGCTGTGCGGCCACCACCAAGACGGCGGAGGCGCGGGTTT‑T‑ACCGCCACGAGGCCGACCCGGGAATAGTTAAg > 2:115217/1‑150 (MQ=255) acaGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGt > 1:263285/1‑64 (MQ=255) acaGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGt < 2:263285/64‑1 (MQ=255) acaGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGGGCGTCCAACACCAATCCGGCGGTGGAGCGGGTTT‑A‑CACGCGAAGAGGCCGACCCAGCAATAGTGCAGCGGTa > 2:3798262/1‑150 (MQ=25) acaGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAAACCGCTCCAACGGGCGGCCTTTTTAAAACC‑AACGATGTGCGGCCACCACCAAACCGGCGTAGGAGCGGGTTT‑A‑ACCCCGAATACGCCCAACCAGCAATAATTAAGCGTTa > 2:2752850/1‑150 (MQ=255) acaGATTTGAGCCAGCAGGGTT‑GGCCACATAGC‑GGGTAAACCCCCACCAAACGGCGGGCGTTTTACAACC‑CCCCATGTGCCTCCACCACCAAAACGGCGGAGGGGCCGGTTT‑A‑CCCGCGAATAGGCCGGCCCAGCAAAAGTGAACCGGTa > 2:469703/1‑150 (MQ=255) aTTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAAACCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCCAATTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTT‑A‑CCCCCGAAGAGGCCGACCCGGCAAAAGTGAAGCGTTAcagc > 2:3462952/1‑150 (MQ=38) tGAGCCTGCTGGGTT‑GGCCTCTGCGC‑GTTTAACCCCCCTCCTCCGGGGGGCCTTTGTCCACCC‑ACGGCTGGGCGCCCCCCACAACTCCGGGGTGGGCG‑GGGTTT‑ACCCCGCTAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTgg < 2:5092085/150‑1 (MQ=255) aGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTTAACAACCAACGAACGGCGGCCATTGTACAAAC‑ACCCAAGTGCGTCCACCACCAAAAAGGCGTAGGAGCGGGTTT‑A‑AAACCGAAAAGGCCCACCCAGCAAAAGTGAAGACGTAATGCTGGGc > 2:1435014/1‑150 (MQ=255) cgctgggTG‑GGCCTCGGCGG‑GGTCAACCCCGCCCCCGGGGGCGGCCTTGCAACACCC‑ACCGGTGGGCGCCCCCCA‑CACCCCGGGGTTGGGCGGGGTTTCC‑CCCGGGAAGCGCCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCAcc < 2:4459792/146‑1 (MQ=255) agcagGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTAAGGGCGGCCGGTGTACAACC‑ACCGAAGTGCGTCCACCACCAATCCGGCGGAGGAGCGGGTTT‑A‑CCCGCGAAGAGGCCGACCCTGCAATAGGGCAGCGTTACTGCAGGGCCAcc > 2:4513772/1‑150 (MQ=25) tgcgggTTGGGCCTCTGGGC‑‑GGTAAAACCCCCCCATCGGGGGGGCTTGTTACCACCAACCGTTGTGCCCCCCCCA‑CAACCCGGGGTTTGGGGGGGTTT‑ACCCCGGTATGCGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCAcc < 2:4459819/147‑1 (MQ=255) ccTCTTCGC‑GGGTAAACCCGCACCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATACGGCGTAGGAGCGGGTTT‑A‑ACCCCGAAGAGGCCGACCCAGCAATAGTGAAGCGTTAATGCTGGGCCACCATCTCCGAcat > 2:1314362/1‑148 (MQ=37) ggTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTT‑A‑CCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAg > 1:1036714/1‑150 (MQ=255) ggTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTT‑A‑CCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAg > 2:2456140/1‑150 (MQ=255) ggTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTT‑A‑CCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAg > 1:2584575/1‑150 (MQ=255) gTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTT‑A‑CCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAgc > 2:5012182/1‑150 (MQ=255) gTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTT‑A‑CCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAgc > 2:2731486/1‑150 (MQ=255) gTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTT‑A‑CCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAgc > 1:3804920/1‑150 (MQ=255) | TTGCCGGAGGCGTTGGTCAAAGCGCGGGCGCACCCGCAGTGGTCCACCCTGAATCCCGGGGCCAAGCTGAATCAGGCTGAGCGGCAGGAGCAGTTGGAGGCGCTGGTTTCACAGATTTGAGCCAGCAGGGTT‑GGCCTCTTCGC‑GGGTAAACCCGCTCCTACGGGCGGCCTTTGTACAACC‑ACCGATGTGCGTCCACCACCAATCCGGCGTAGGAGCGGGTTT‑A‑CCCGCGAAGAGGCCGACCCTGCAATAGTGAAGCGTTACTGCTGGGCCACCTTCTCCGACTTGCCGTCATAGC > NC_002947/5860681‑5860975 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |