| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,392,933 | C→G | 17.3% | intergenic (+97/‑89) | PP_1214 → / → ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,392,933 | 0 | C | G | 17.3% | 283.6 / 50.7 | 122 | intergenic (+97/‑89) | PP_1214/ruvC | transcriptional regulator/crossover junction endodeoxyribonuclease RuvC |
| Reads supporting (aligned to +/- strand): ref base C (42/53); new base G (15/6); total (61/61) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.03e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.86e-01 | |||||||||||
Only 100 of 124 total aligned reads displayed.
ACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCC > NC_002947/1392784‑1393082 | aCGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑c < 2:1637901/150‑1 (MQ=255) gTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑Caa > 1:5094534/1‑150 (MQ=255) tCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑Caaa < 2:5094534/150‑1 (MQ=255) tCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑Caaa < 2:4152926/150‑1 (MQ=255) cTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAAt < 1:1749282/150‑1 (MQ=255) tATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAAtg < 1:92568/150‑1 (MQ=255) ttCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTTAACCCGCGCCGCCACGTGTTTCGCC‑CAGTT‑CAAAtggg > 1:1220796/1‑148 (MQ=255) ttCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAAtgtg < 1:3812175/150‑1 (MQ=255) ttCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAAtgtg < 2:3676732/150‑1 (MQ=255) ttCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTT‑GAAAtgg < 1:1488707/150‑2 (MQ=37) ttCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTT‑GAAAtgg < 2:4837828/150‑2 (MQ=37) ccAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTT‑GAAAtgggc < 1:1957576/150‑4 (MQ=37) ccAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTT‑GAAAtgggc < 1:4860019/150‑4 (MQ=25) cAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTTAAACCCCGCCAACAGGTAGTAAGCC‑CAGTT‑CACATggggtg > 1:2104096/1‑150 (MQ=255) cAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATgtggtg < 1:1032157/150‑1 (MQ=255) cAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCGTTCGCGGGGTGAACCGCTCCGACAGGTTTTTCGCC‑CAGTT‑GAAATgtggtg > 1:2104052/1‑150 (MQ=255) ccAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTAc < 1:55804/150‑1 (MQ=255) ccAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTAc < 2:1875345/150‑1 (MQ=255) ccAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTAc < 1:1186005/150‑1 (MQ=255) aGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCt < 1:1697245/150‑1 (MQ=255) aTTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGt < 2:4194381/150‑1 (MQ=255) tttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTa < 1:4928497/150‑1 (MQ=255) tttCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTACTGCACCACATTT‑GAAATG‑GGCGTAATACCTGTa < 1:588114/150‑1 (MQ=21) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCgg < 2:3867287/150‑1 (MQ=255) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCgg < 1:3834460/150‑1 (MQ=255) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCgg < 1:3634724/150‑1 (MQ=255) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCgg < 2:1366918/150‑1 (MQ=255) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCgg < 2:4752715/150‑1 (MQ=255) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCgg < 2:4752747/150‑1 (MQ=255) cgaGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCgg < 1:124856/150‑1 (MQ=255) gagaTCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCggg < 2:466330/150‑1 (MQ=255) agaTCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGCGCAGTACCTGTAGGAGCGGGt < 1:4772719/150‑1 (MQ=255) aTCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGttt < 1:953420/150‑1 (MQ=255) aTCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGttt < 1:667113/150‑1 (MQ=255) tCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCGCCAACAGGTATTAAGCC‑CAGTT‑CAAATGTGGTGCAGTACCGGTAGGGGCGGGGTTa > 2:3225359/1‑150 (MQ=38) cATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTTAACCCGCTACTAAAGGTATTAAGCC‑CAATT‑AAAAAGTTGTGCAGTAACAGTTGGAGCGGGGTTA‑c > 2:1570490/1‑150 (MQ=255) cATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑c < 2:4220597/150‑1 (MQ=255) cATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGATTA‑c < 1:3245966/150‑1 (MQ=255) ggAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑ccc < 1:315923/149‑1 (MQ=255) gAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCcgc < 2:4425017/150‑1 (MQ=255) tCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCACTACCAGTATGAGCCGGTTTA‑ACcgcaccgaca > 1:3790326/1‑143 (MQ=38) tCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCGCCTACAGGTATTACGCC‑CATTT‑CAAATGGGGTGCAGTACCGGTAGGAGCGGGTTTT‑ACCGCGGAAggg > 2:3090698/1‑150 (MQ=38) ggCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCTTTTGATAGCGCCTGGGCGGGCCCTTTCGCGGGTAAACCCGCTCCTCCAGGTATTCCGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGGGCGGGTTTA‑CCCGCGAAAGGGcc < 2:1147061/150‑1 (MQ=37) ggCTTTTGGGGCCACCTGTGTGCGTTGTAGCGCGCGGGTGCCGCCCGTTCCGCGGGTAACCCCGCTCCACCCGTTATGCGGCC‑CTGTT‑CAACGGTGGTGCCGTCCGTGTTGGCGCGGTTTTC‑CCCGCGAATGGGCCGGCGCAGTTTGTag < 2:3674697/150‑1 (MQ=255) tgCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCATTCGCGGGGAAAACCCCACCGAAAGGTAATAACCC‑CAAAT‑AAAAAGTGGGGCAGTACCGGTAGGTGCGGGGTTA‑ACCCCCCAACGGCCCGCGCCGGTTGGAGAGATGcata > 2:3423549/1‑149 (MQ=255) ccAACTCTGAGCGTTTTATTGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACCGGTATTACGCC‑CATTT‑CAAATGTGGTGCTGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGcatcat < 2:5078988/150‑1 (MQ=255) gCGTTTGATAGCGCCTGTGCCGGCCCTTTCCCGGGTAAAACCCCACCAAAACGGCAAAAGCC‑CAATT‑AAAAATTGGTGCACTAACTGGAGGAGCGGGGTTA‑ACCCCGAAACGGCCCGCGCCCTTTTTGGAGAAGCAAAAATTTTTAGACg > 2:3981021/1‑150 (MQ=255) cgcCTGTGCCGGCCCTTTGGGGGTTAAACCCGCTCCTACAGTTATTACGCC‑CTTTT‑CAAATGTGGTGCAGTACCTTTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGAc < 1:4653715/150‑1 (MQ=38) tgCCGGCCCTTTCGCGGGTAAAACCGCTCCGACACGTATTACGCC‑CAATT‑CAAATGGGGGGCAGGACCGTTAGGAGCGGGGTTA‑ACCGCGAAAGGGCCGGCGCCGGTTGTATAGTAGCAACCTTTTTTAGACGGGCTTTATTAcgcagag > 2:3364191/1‑144 (MQ=255) tgCCGGCCCTTTCGCGGGTAAAACCGCTCCAAAAGGTATTACGCC‑CAGTT‑CAAAAGTTGTTCATTACCGGTATGAGCGGGTTTA‑ACCGCGAAAGGGCCGGCGCAGTTTTTAGAGATGGATCAATTTTTCGTCGGGCGTTATGACTGTGAt > 2:3364205/1‑150 (MQ=255) gCCGGCCCTTTCGGGGGTAAACCCGCTCCCCCCGGTATTCCGCC‑CTTTA‑CAATTGTGGTGCTGTACCTGTAGGCGGGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGAtt < 2:1220796/150‑1 (MQ=37) gccccTTGCGCGTGTAAACCCGCTCCTACCGG‑AATACCCC‑CATTTACACATGTGGTGCTTTCCCGTTAGTTG‑GGGTTTACCCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTa < 2:2599794/148‑1 (MQ=255) tttCGCGGGTAAAACCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTTCAGTACCTGTATGATCGGGTTTA‑CCACCGAAAGGGCCGGCGCAGTTTGTAGAGATGAATCATTTTTTCGAAGGGCTTTATTACTCTGATTCTAgtgat > 2:3979897/1‑146 (MQ=255) gggTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGAccc > 1:172278/1‑150 (MQ=255) gggTAAACCCGCTCCTACAGGTACTGCACCACATTT‑GAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGAccc > 1:4672725/1‑150 (MQ=17) gggTAAACCCGCTCCTACAGGTACTGCACCACATTT‑GAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGAccc > 1:4672724/1‑150 (MQ=17) gTAAACCCGCTCCTACAGGTACTGCACCACATTT‑GAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCg > 1:2475590/1‑150 (MQ=17) aaaCCCGCGCCTCCCGTTATTACGCC‑CATTT‑CAACGGGGGTGATGTACCTGTTGGAGGGGGTTTA‑CCCGCGAATGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGc < 2:3416212/150‑1 (MQ=255) aaaCCCGCCCCTCCCGTTTTTACGCC‑ATTTT‑CAATTTGGGTGCAGTACCTGTTGGTGGGGTTTTC‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGc < 2:844329/150‑1 (MQ=255) acccggCTCCTACCGTTTTCCCGCC‑ATTTT‑CAATTGTGTTGCTGTCCGTTTTGTAGGGGTTTAA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCt < 2:254452/145‑1 (MQ=255) aCCCGCTCCTACAGGTACTGCACCACATTT‑GAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTc > 1:3828960/1‑150 (MQ=18) cccGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCCGTGTGTAGAGAGGCCTCATTTTTTCGACGGGCTTTCTGACTCTGATTCTAGGTATCGACCCCGGCTcg > 2:2950655/1‑150 (MQ=38) cccGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcg > 2:2950464/1‑150 (MQ=255) ccGCTCCTCCCGGTATTACGCC‑CTTTT‑CAATTGTGGTGCAGTACCTGTTGGAGGGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc < 2:832156/150‑1 (MQ=255) ccGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGGAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc > 2:4638969/1‑150 (MQ=255) ccGCTCCTACAGGTACTGCACCACATTT‑GAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTcgc > 2:827862/1‑150 (MQ=18) cTCCTACAGGTACTGCACCACATTT‑GAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCa > 1:1550922/1‑150 (MQ=18) tCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCAt > 2:374930/1‑150 (MQ=255) ccTACGGGTTTAACGCC‑CTTTA‑AAAATGTGTTGACGTACCTTTTGGTGGGGTTTTC‑CCCGCGAATGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATc < 2:2576056/150‑1 (MQ=255) ccTACCGTTTTTACGCC‑CTTTA‑CAATTGTGGTGCAGTACCTTTTGGCGCGGTTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATc < 2:2540900/150‑1 (MQ=255) cTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 1:2887395/1‑150 (MQ=255) cTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 1:2626943/1‑150 (MQ=255) cTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:4894957/1‑150 (MQ=255) cTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 1:4520729/1‑150 (MQ=255) cTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:5095011/1‑150 (MQ=255) cTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:5094645/1‑150 (MQ=255) cTACAGGTACTGCACCACATTT‑GAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 2:3175540/1‑150 (MQ=18) cTACAGGTACTGCACCACATTT‑GAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCACAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCa > 1:2944928/1‑150 (MQ=18) tACAGGTACTGCACCACATTT‑GAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:576650/1‑150 (MQ=21) tACAGGTACTGCACCACATTT‑GAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:3414545/1‑150 (MQ=21) tACAGGTACTGCACCACATTT‑GAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 1:3414434/1‑150 (MQ=21) tACAGGTACTGCACCACATTT‑GAAATG‑GGCGTAATACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAc > 2:1377455/1‑150 (MQ=21) aCAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAcc > 1:4274043/1‑150 (MQ=255) aCAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAcc > 1:4274134/1‑150 (MQ=255) aCAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCAcc > 1:1023941/1‑150 (MQ=255) ccgttATTACGCC‑CTTTT‑CAACTGTGGTGCAGTACCTGTAGGAGCGGTTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCg < 2:2104052/146‑1 (MQ=255) aGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCgg > 1:5070940/1‑150 (MQ=255) aGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCgg > 2:489351/1‑150 (MQ=255) tATTACGCC‑CATTT‑CAAATGTGCTGCAGTACCGGGAGGAGCCGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTa > 2:564124/1‑150 (MQ=255) gcccGCC‑CTTTT‑CACTTGTGGTGCAGGACCGGTTGGCGGGGGTTCC‑CCCGCGAACGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATg < 2:852335/147‑1 (MQ=255) gCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 2:2872563/1‑150 (MQ=255) gCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 2:1357705/1‑150 (MQ=255) gCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 1:3344589/1‑150 (MQ=255) gCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGATTGAAGAGATGCATCATTTTTTAGACGGGATATATGACTCATATACTAGTTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGt > 1:3963481/1‑150 (MQ=38) cc‑cATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTg < 1:5094645/150‑1 (MQ=255) cc‑cATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTg > 1:2367572/1‑150 (MQ=255) cc‑cATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCACGGCTCGCGCATCACCGGCTATGGCGTg > 2:1395246/1‑150 (MQ=255) cc‑cATTT‑CAAAGGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTg < 2:2060508/150‑1 (MQ=255) c‑cATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTGTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTgg > 2:3819085/1‑150 (MQ=255) cAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGcc > 1:3260279/1‑150 (MQ=255) | ACGTCTATTCCAATGCCCAGATTTCCGACGAGATCATGGAAAACCTCGGCTAAGGTGATTTGGCATTTTGTGCCAACTCTGAGCGTTTGATAGCGCCTGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTATTACGCC‑CATTT‑CAAATGTGGTGCAGTACCTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCGGCGCAGTTTGTAGAGATGCATCATTTTTTCGACGGGCTTTATGACTCTGATTCTAGGTATCGACCCCGGCTCGCGCATCACCGGCTATGGCGTGGTACGCC > NC_002947/1392784‑1393082 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |