| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,634 | 0 | C | T | 35.9% | 543.5 / inf | 507 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (150/170); new base T (83/96); total (238/269) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.26e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 542 total aligned reads displayed.
TCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCA > NC_002947/195486‑195782 | ccAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGa < 2:324062/149‑1 (MQ=39) cAGACCCCGCCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATATCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGAACAACGACTCGGTCG‑‑ACACCACCACCGCGAc < 1:840404/149‑1 (MQ=255) ccccGGCAAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGTTATTTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTg < 1:1339563/149‑1 (MQ=255) ccGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGAc < 2:5015321/149‑1 (MQ=39) ccGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGAc > 2:682878/1‑149 (MQ=39) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGGAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGc > 1:6233062/1‑149 (MQ=37) tGACGTCTACAACAGCGGTTCGAGCGTCAGCGTCACCAGCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGcc > 2:1162714/1‑149 (MQ=255) tGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGAAAGTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGcc > 2:1371071/1‑149 (MQ=255) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGGTCGAGccgtt < 2:6144242/149‑4 (MQ=255) acaacaACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTc < 1:1251358/149‑1 (MQ=37) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCAc > 1:4107759/1‑149 (MQ=37) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCAc > 2:2392934/1‑149 (MQ=17) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGaa < 1:2124288/149‑1 (MQ=37) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGaa > 1:6584045/1‑149 (MQ=37) acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGaa < 2:6995884/149‑1 (MQ=17) cGGTTCGACCGCCCGCGTCACCATCTCGACCGCCCCCGGGGGTTTTTTGGAGCAAATGCCCCCGCATCCGACCCCGGGTCAGACCACGATCAACGACTCGGTCGACACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGa < 1:6625878/149‑1 (MQ=11) tCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAggcgg > 1:246098/1‑149 (MQ=37) tCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAggcgg < 2:5595993/149‑1 (MQ=37) cGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAggcggc < 1:1640703/149‑1 (MQ=37) ccGTCAGCGTCACCATCGAGACCGCCCCCGGCGGTAAGTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGGCCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGGCGGCGGCGTg > 2:7540186/1‑149 (MQ=11) ccGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTg < 2:3581883/149‑1 (MQ=17) cAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCTGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa > 2:3986436/1‑149 (MQ=255) cAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa > 2:5791084/1‑149 (MQ=39) cGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACACTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACtt > 2:2294196/1‑149 (MQ=12) tCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTac > 1:6726710/1‑149 (MQ=21) cttCGAGACCGCCACAGGCGGTATTTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCTGAACACGTCCAACTACTCGGTCG‑‑ACCCCTCTACAGCGCCCCTGACGT‑CTAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg < 1:3734026/147‑1 (MQ=11) tCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑AAACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTg > 1:5645594/1‑149 (MQ=17) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTg > 2:1816185/1‑149 (MQ=17) gaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAccc > 2:4718261/1‑149 (MQ=39) gaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAccc > 2:1465322/1‑149 (MQ=17) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt < 1:5967530/149‑1 (MQ=17) aCGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTg < 1:2348345/149‑1 (MQ=39) aCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTg < 1:6852523/149‑1 (MQ=17) ggcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAccc < 1:6359854/149‑1 (MQ=39) cggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ATGCCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTg < 1:4826634/149‑1 (MQ=17) cggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTg > 2:2759548/1‑149 (MQ=21) cggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTg > 1:3287941/1‑149 (MQ=21) ggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGc < 2:4093328/149‑1 (MQ=39) tAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ATGCCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGccc < 1:1478177/149‑1 (MQ=12) cGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc < 2:5284066/149‑1 (MQ=21) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ATGCCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGcc < 1:7030408/149‑1 (MQ=17) aGCAACTGACCCCGTATCCTACCCCGGCACATACCACTATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTTATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg < 1:6523624/149‑1 (MQ=11) gCAACTGACCCCGAATCCGACCCCGGCTCAGACCACCATCAACGACTCGGTCG‑‑ATGCCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCgg < 2:1063762/149‑1 (MQ=12) cTGACCCCTATTCCGACCCCGGCTCAGACCACGATCTACGACTCGGTCG‑‑ATGCCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGtggc < 2:596345/149‑4 (MQ=11) gACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ATGCCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCg > 1:4586446/1‑149 (MQ=9) ccccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCTGTCACCGAAGGCGGCGTGATCACCTACTCCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg < 2:4574541/149‑1 (MQ=255) cccGAATCCGACCCTGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGa < 2:4644265/149‑1 (MQ=255) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGa < 2:5869710/149‑1 (MQ=255) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGa < 2:802005/149‑1 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGCCTCGCTCG‑‑ACACCACCCCCGCGACCCGGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGATCAACCCTGCCGAGACGCCGGTAACCGTGac < 1:4970107/149‑2 (MQ=14) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ATGCCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGac > 1:1033526/1‑148 (MQ=9) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa > 1:4535635/1‑149 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa < 2:4989104/149‑1 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCCACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa < 2:29850/149‑1 (MQ=255) ccGAATCCGACCCCGGCACAGACCACGATCAACGACTCGGTCG‑‑ATGCCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGAACACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGac < 1:3010107/149‑2 (MQ=11) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ATGCCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGacc < 2:7303956/149‑3 (MQ=2) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGa > 2:6481436/1‑85 (MQ=18) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGa < 1:6481436/85‑1 (MQ=18) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGt < 1:2956593/94‑1 (MQ=18) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc > 2:4333519/1‑149 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc > 2:5698580/1‑149 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc > 1:7526518/1‑149 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc > 1:193155/1‑149 (MQ=255) gAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAcc > 1:7421224/1‑149 (MQ=255) aTCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTg < 2:4278808/149‑1 (MQ=255) tCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGt < 1:4394285/149‑1 (MQ=255) tCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGt < 2:1999243/149‑1 (MQ=255) aCCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ATGCCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTg > 2:3104447/1‑138 (MQ=17) aCCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCaa > 1:5717764/1‑149 (MQ=255) ccccGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAAc < 1:5284101/149‑1 (MQ=38) ccccGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAAc < 1:2638435/149‑1 (MQ=38) ccccGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAAc < 2:632077/149‑1 (MQ=40) ccccGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAAc < 1:351698/149‑1 (MQ=40) ccGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACgg > 2:3853373/1‑149 (MQ=37) ccGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACgg < 1:5076642/149‑1 (MQ=37) cGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGc > 1:7276342/1‑149 (MQ=39) ggCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGcc > 2:1272839/1‑149 (MQ=37) cTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCaa > 2:2106421/1‑149 (MQ=37) cTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCaa < 2:2864227/149‑1 (MQ=39) cTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCaa < 1:3111637/149‑1 (MQ=39) cAGACCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAAc > 2:6008551/1‑149 (MQ=37) aGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACg < 2:4895437/149‑1 (MQ=39) gACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACtt < 1:3628785/83‑1 (MQ=32) aCCACGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt < 2:1680253/149‑1 (MQ=255) cACGACCCACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGTAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTa < 1:5370997/149‑1 (MQ=255) aCGATCAACGACTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTAc > 2:5844416/1‑149 (MQ=255) cGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg > 1:1865276/1‑77 (MQ=34) ccTCGGTCG‑‑ACACCACTACCGCGCCCCGGACGG‑CGAGCGCTTCGGTCACGGTAGGCGGCGTGATCTCTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCg < 1:7167527/148‑1 (MQ=14) aaactatCG‑‑ACACTACAACCGCGACCCTGACCG‑CGTCGCCTTGCGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCg < 1:4667168/143‑1 (MQ=11) aCTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCg < 2:4805073/149‑1 (MQ=255) aCTCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCg < 1:2806794/149‑1 (MQ=255) aCTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCg < 2:3405870/149‑1 (MQ=39) tCGGTCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCggg > 2:3711507/1‑149 (MQ=255) tCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATAACTTACACAGTGACACTGAGCAACCCTGACCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCggg > 1:3865264/1‑149 (MQ=255) cGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGt > 2:4235208/1‑149 (MQ=39) tCG‑‑ACACCACTACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaa < 2:6573965/149‑1 (MQ=255) tCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAccc > 1:3961367/1‑75 (MQ=34) tCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaa > 2:191899/1‑149 (MQ=39) cactaccGCGACCCGGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCACCCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg < 2:6747071/149‑1 (MQ=255) ccaccGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGc > 2:7212140/1‑149 (MQ=39) | TCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑‑ACACCACCACCGCGACCCTGACGG‑CGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGGCA > NC_002947/195486‑195782 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |