Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,445,4940TG26.9% 236.7 / 23.7 165F763C (TTT→TGT) PP_3062tail length determination protein
Reads supporting (aligned to +/- strand):  ref base T (76/38);  new base G (38/4);  total (115/50)
Fisher's exact test for biased strand distribution p-value = 2.29e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 167 total aligned reads displayed.

GAGGGCTACGGCGGCGCTGCCGGCAGCCTGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGT  >  NC_002947/3445346‑3445641
                                                                                                                                                    |                                                                                                                                                   
  gggCTACGGCCGCGCTGCCGGCAGCCTGGCCGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTCTTGGCTCCGTGGCGCCGGTGCTCGGTACCGCTGGGGGTGGCGCGGTCGGCGCGGGCCTTGGTGGCATGGGGGGCGAGTCGTTTg                                                                                                                                                   <  2:5314223/149‑1 (MQ=255)
  gggCGACGGCGGCGCTGCCGGCAGCCTGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCGGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTg                                                                                                                                                   <  2:3520326/149‑1 (MQ=255)
   ggCTACGGCGGCGCTGCCGGCAGCCTGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTgg                                                                                                                                                  <  2:2451754/149‑1 (MQ=255)
   ggCTACGGCGGCGCTGCCGGCAGCCTGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTgg                                                                                                                                                  <  2:1360573/149‑1 (MQ=255)
      tACGGCGGCGCTGCCGGCAGCCTGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTggggg                                                                                                                                               >  2:6863892/1‑149 (MQ=255)
      tACGGCGGCGCTGCCGGCAGCCTGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTGTggggg                                                                                                                                               >  1:6988939/1‑149 (MQ=255)
       aCGGCGGCGCTGCCGGCAGCCTGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTgggggg                                                                                                                                              <  2:4718173/149‑1 (MQ=255)
       aCGGCGGCGCTGCCGGCAGCCTGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTgggggg                                                                                                                                              <  1:2353773/149‑1 (MQ=255)
           cggcgCTGCCGGCAGCCTGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTCTTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTGTGGGGGGTGGc                                                                                                                                          >  2:2709296/1‑149 (MQ=255)
            ggcgCTGCCGGCAGCCCGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCt                                                                                                                                         <  1:2658536/149‑1 (MQ=255)
            cgcgcGGCCGGCACCCGGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGCCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCt                                                                                                                                         <  1:5959656/148‑1 (MQ=255)
             gcgcTGCCGGCAGCCTGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTg                                                                                                                                        <  1:2819897/149‑1 (MQ=255)
             gcgcTGCCGGCAGCCTGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTg                                                                                                                                        <  2:1091803/149‑1 (MQ=255)
             gcgcTGCCGGCAGCCTGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTg                                                                                                                                        <  2:221821/149‑1 (MQ=255)
                   ccGGCAGCCTGGCGGGCCCCCTGGCCGGTGCTGCAGCGGGGGCGGCGATGGGCTCCGTGGTGCCGGTGATCGGGACCGCGGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAg                                                                                                                                  <  2:5931171/149‑1 (MQ=255)
                    cGGCCGCCTGCCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCGCGTGGCTCCGTGGTGCCGCTGCTCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGGGGCAGGGGGGGCGAGTCGTGTGGGGGGTGGCTGGGcccgc                                                                                                                                 >  2:49778/1‑145 (MQ=255)
                    cGGCAGCCTGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCGATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCAGGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGc                                                                                                                                 >  2:5506192/1‑149 (MQ=255)
                     ggCCGCCTGGCGGGCCCCCTGGCGGGTGCGGCAGCGGGGGCGGGTATGGGCTCCGTGGTGCCGGTGATCGGCACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCAGGGGGGGCGAGTCGGTTGGGGGGTGGCGGGGCAAGCg                                                                                                                                <  2:267404/149‑1 (MQ=255)
                     ggCAGCCTGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTGTGGGGGGTGGCTGGGCAcgcg                                                                                                                                >  2:5908555/1‑149 (MQ=255)
                      gCAGCCTGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTGTGGGGGGTGGCTGGGCAAGCGa                                                                                                                               >  1:2771562/1‑149 (MQ=255)
                      gCAGCCTGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTGTGGGGGGTGGCTGGGCAAGCGa                                                                                                                               >  1:1410023/1‑149 (MQ=255)
                       cAGCCTGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTGTGGGGGGTGGCTGGGCAAGCGAt                                                                                                                              >  1:7204710/1‑149 (MQ=255)
                            gggCGGGCACCCTGGCCGGTGCTGCCGCGGGGGCGGCCAGTGGCACCGTGGTGCCGGTGATCGGTACCGCTGTGGGCGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGttt                                                                                                                         <  2:4334882/148‑1 (MQ=255)
                            aggCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTTTTGGCTCCGGGGTGCCGGTGATCGGTACCGCTGTGGGTGGCCCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGttt                                                                                                                         <  2:3688515/148‑1 (MQ=255)
                                  gCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGCTGGTTTGGTGAc                                                                                                                   >  1:3144075/1‑149 (MQ=255)
                                   cACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTGTGGGGGGTGGCTGGGCCAGCGATGGTTTGGTGACg                                                                                                                  >  1:759923/1‑149 (MQ=255)
                                   cACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTGTGGGGGGTGGCGGGGCCAGCGATGGTGTGGTGACg                                                                                                                  >  2:4444320/1‑149 (MQ=255)
                                   cACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGGGTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACg                                                                                                                  >  1:1559982/1‑149 (MQ=255)
                                   cACCCGGGCCGGTGCCGCAGCGGGGGCGGCGACGCGCTCCGCGGGGCCGGCGCCCGCAACCGCGGGGGGGGGCGCGGTCGGCGCGGGCCGCGGCGGCAGGGGGGGCGAGCCGCGGGGGGGGCGGCTGGGCAAGCGATGGTTTGGTGACg                                                                                                                  <  2:7259180/149‑1 (MQ=255)
                                     cccTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAg                                                                                                                >  2:3204598/1‑149 (MQ=255)
                                       cTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCCAGCGATGGTGTGGTGACGAgcc                                                                                                              >  2:3444010/1‑149 (MQ=255)
                                       cTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTGTGGGGGGTGGCTGGGCACGCGATGGTTTGGTGACGAgcc                                                                                                              >  1:546443/1‑149 (MQ=255)
                                       cTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCGGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAgcc                                                                                                              >  1:6058677/1‑149 (MQ=255)
                                            cGGTGCAGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCATTGGTGGCATGGGGGGCGAGTCGTTTTGGGGGTGGCTGGGCAATCGAATGTTTGGTGAATAgccggccg                                                                                                         >  1:1075255/1‑149 (MQ=255)
                                            cGGCGCTGCAGCGGGGGCGGCTCTTGGCCCCGGGGTGCCGGGCACCGGTCCCGCGCGGGGGGGCGCGCGCGGCGCTGTCCGGGGTGGCATGGGGGGCGAGACGGTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAgccggccg                                                                                                         <  2:4691232/149‑1 (MQ=255)
                                            cGGCGCGGCAGCGGGGGCGGCCATCCGCACCGGGGTGCCGGTGACCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTGGGCGGCATGGGGGGCGAGTCGTCTGGGGGGGGGCTGGGCAAGCGATGGTTTGGTGACGAgccggccg                                                                                                         <  2:1708064/149‑1 (MQ=255)
                                             cgggcggcAGCGGGGGCGGCGACGGGCCCCGTGGTCCCGCTGATCGGCCCCCCGGGGGCTGGCGCGGCCGGCGCCCCCCGGGCGGGCACGGGGGGCGAGCCGCCTGGGGGGGGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCcga                                                                                                        <  2:5918493/143‑1 (MQ=255)
                                              gTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCcgac                                                                                                       >  2:6445138/1‑149 (MQ=255)
                                                gcggcAGCTGGGGCGGGAATTGCCTCAGTGGTGCCGGTGAACGCTACCGCTCTGGCTGGCGCGGTCGCCGCTGTCCTTGGTGGCCTGGGGCGCCACTCGTCAGGGGCCGGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCcgacga                                                                                                     <  2:2588694/146‑1 (MQ=255)
                                                 ctgcAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTGTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCcgacgag                                                                                                    >  1:5042434/1‑148 (MQ=255)
                                                 ccgcAGCGGGGGCGGCCACTGGCCCCGCGGCGCCGCCGACCGGGACCGCCGCGGGCCGCCCCCCCGCCGCCGCCCCTCGCGCCACGGGGGGCGAGCCGCTCGGGGGCGGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGAt                                                                                                    <  2:1758460/147‑1 (MQ=255)
                                                  tgcAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCACGCGATGGTTTGGTGACGAGCCGGCCGACGATc                                                                                                   >  2:1481393/1‑149 (MQ=255)
                                                   gcAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCCAGCGATGGTTTGGTGACGAGCCGGCCGACGATCa                                                                                                  >  1:5723017/1‑149 (MQ=255)
                                                   gcAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCa                                                                                                  >  1:3955456/1‑149 (MQ=255)
                                                   gcAGCGGGGGCGGCCATTGGCCCCGGGGTGCCGGTGACCGGTACCGCTGTGGGTGGCGCGGCCGGCGCGGCCCTGGGGGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCa                                                                                                  <  2:546443/149‑1 (MQ=255)
                                                    cAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTGTGGGGGGTGGCTGGGCACGCGATGGTTTGGTGACGAGCCGGCCGACGATCaa                                                                                                 >  2:5353704/1‑149 (MQ=255)
                                                     cgCGGGGGCCGCTAGTGGCTCCGGGGGGCCGCTGCCCGGCACCCCTGCGGGCGGCGCGGCCGGCGCTGTCCGTGGTGGCATGGGGGGCGCCTCGTTGGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAag                                                                                                <  2:6353198/148‑1 (MQ=255)
                                                     aGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCCAGCGATGGTTTGGTGACGAGCCGGCCGACGATCaac                                                                                                >  1:3777504/1‑148 (MQ=255)
                                                     aGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAag                                                                                                >  1:12095/1‑149 (MQ=255)
                                                               gcTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTGTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGa                                                                                      >  2:3287236/1‑149 (MQ=255)
                                                                       cTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATcgccgc                                                                              >  1:4883568/1‑149 (MQ=255)
                                                                        tCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTGGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGGATCgccgcc                                                                             >  1:4351640/1‑149 (MQ=255)
                                                                           gtggtgCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGc                                                                          >  1:1940363/1‑149 (MQ=255)
                                                                           gtggtgCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTGTGGGGGGTGGCTGGGCCAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGc                                                                          >  1:1940084/1‑149 (MQ=255)
                                                                            tggtgCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCa                                                                         >  2:3095294/1‑149 (MQ=255)
                                                                            tggtgCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTGTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGCCa                                                                         >  2:5519620/1‑149 (MQ=255)
                                                                               ccccGGCGACCGGCACCGCCGCGCGCGCCGCGGCCGGCGCGGACCTCGGGGCCACGGGCGGCGAGCCGAGCGGGGGGGGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTg                                                                      <  2:140174/147‑1 (MQ=255)
                                                                                 ccGGTGCGCGGCCCCGCGGTGGGGGGCGCGGTCGGCGCGGCCCCGGGGGGCCGGGGGGCCCCGACGGGTGGGGGGGGGGTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTggg                                                                    <  2:7306598/149‑1 (MQ=255)
                                                                                  cGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGt                                                                   >  1:4788858/1‑149 (MQ=255)
                                                                                  cGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGt                                                                   >  2:1144689/1‑149 (MQ=255)
                                                                                    gTGATCGGTACCGCAGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTac                                                                 >  2:4000987/1‑148 (MQ=255)
                                                                                     tGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTGTGGGGGGTGGCTGGGCCAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTcaa                                                                >  1:5889352/1‑149 (MQ=255)
                                                                                       aTCGGTACCGCTGCGGGCCCCGCGCTCGGCGCTGCCCCCCGCGGCATGGGGCGCGAGTCGACTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGc                                                              <  2:5024813/149‑1 (MQ=255)
                                                                                           gTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTa                                                          >  2:4303860/1‑149 (MQ=255)
                                                                                           gTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTGTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGTCGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCCGCACAGGGTGAAGCGATa                                                          >  1:5554422/1‑149 (MQ=255)
                                                                                            tACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTGTGGGGGGTGGCTGGGCAAGCGATGGGGTGGTGACGAGCCGGCCGACCATCCAGCCGAGCCGGAAACGCCGCCGGCACTGGGTAAAGCGTTAc                                                         >  1:3095204/1‑149 (MQ=255)
                                                                                            tACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTGTGGGGGGTGGCTGGGCAAGCGAGGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGGTAc                                                         >  2:3929496/1‑149 (MQ=255)
                                                                                                gCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCAAGGGGGGCGAGTCGTATGGGGGGTGGCGGGGCAAGCGATGGTATGGTGACGAGCCGGCCGACGAACAAGCCCAGCCGGCATCGCCGCCGGCACGGGGTACACCGTTACGCGt                                                     >  2:6193935/1‑149 (MQ=255)
                                                                                                 cTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTa                                                    >  2:1939866/1‑149 (MQ=255)
                                                                                                  tgtgGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTaa                                                   >  2:6313989/1‑149 (MQ=255)
                                                                                                  tgtgGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTaa                                                   >  1:6938195/1‑149 (MQ=255)
                                                                                                  tgtgGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTaa                                                   >  1:6938545/1‑149 (MQ=255)
                                                                                                  tgtgGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTaa                                                   >  1:5593476/1‑149 (MQ=255)
                                                                                                  tgtgGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGAGGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCCCTGGGTAAAGCGTTACGCGTaa                                                   >  2:144037/1‑149 (MQ=255)
                                                                                                   gtgggtggCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGGTTGGGGGGTGGCTGGGCCAGCGCTGGTTTGGTGACGAGCCGGCCGACCATCAAGCCGAGCCGGAATCGCCGCCGGCCCGGGGTAAAGCGTTACGCGTAAc                                                  >  1:6486457/1‑149 (MQ=255)
                                                                                                     gggtggCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACgg                                                >  1:1786257/1‑149 (MQ=255)
                                                                                                       gtggCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTg                                              >  2:4802619/1‑149 (MQ=255)
                                                                                                        tggCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCGGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGa                                             >  1:1060313/1‑149 (MQ=255)
                                                                                                         ggCGCCGTTCGCGCGGTCCTTGCCGGGTTGGGGGGGGCGACGAGTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCGGGCCGACGATCAAGCCGAGCCGGTATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGAt                                            <  2:6653477/149‑1 (MQ=255)
                                                                                                           cgcgGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGTCGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATgc                                          >  2:863443/1‑149 (MQ=255)
                                                                                                                 cGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTGTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATgccagcca                                    >  2:2365685/1‑149 (MQ=255)
                                                                                                                   gcgcTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAg                                  >  2:2190800/1‑149 (MQ=255)
                                                                                                                        gTCCTTGGTGGCATGGGGGGCGAGTCGTTTTGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCCGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGt                             >  1:2077844/1‑149 (MQ=255)
                                                                                                                        gTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCCGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGGAAAGCGTTACGCGTAACGGGGATGCCAGCCCAGGAAGt                             >  2:107510/1‑149 (MQ=255)
                                                                                                                           cTTGGTGGCATGGGGGGCGAGTCGTGGGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTCAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGa                          >  2:7155995/1‑149 (MQ=255)
                                                                                                                            ttGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCCACGGATGGTTTGGTGACGAGCCGGCCGAAGATCAAGCCGAGCCGGAAACGCCGCCGGCCCTGGGTAAAGCGTTACGCGTAACGGTTATGCCAGCCACGGAAGTCGAg                         >  2:6531065/1‑149 (MQ=255)
                                                                                                                            ttGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCCGAATCGCCGCCGGCACTGGGTAAAGCGTTAAGCGTAACGGTGATGCCAGCCAAGGAAGTCGAg                         >  2:5822054/1‑149 (MQ=255)
                                                                                                                            ttGGTGGCATGGGGGGCGAGTCGTGTGGGGGGTGGCTGGGCAAGCGAGGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAg                         >  1:3007281/1‑149 (MQ=255)
                                                                                                                             tggtggCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGAGGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGc                        >  2:3809720/1‑149 (MQ=255)
                                                                                                                              ggtggCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGcc                       >  1:3044763/1‑149 (MQ=255)
                                                                                                                                  gCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCCAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATAGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAg                   >  2:2873596/1‑149 (MQ=255)
                                                                                                                                   cagggggggCGAGTCGTTTGGGGGGTGGCTGGGCACGCGCTGGTGTGGTGACGGGCCGGCCGACGATCAAGCCGCGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGCTGCCAGCCCAGGAAGTCGAGCCTGAGc                  >  2:3870225/4‑149 (MQ=255)
                                                                                                                                     tGGGGGGCGAGTCGTTTGGGGGGTTGCTGGGCAAGCGATGGTTTTGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAATCGTTACCCCTAACGGTGATTCCAGCCAAGGAAGTCGAGCCAGAGccc                >  1:4043121/1‑149 (MQ=255)
                                                                                                                                     tGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGccc                >  2:523422/1‑149 (MQ=255)
                                                                                                                                     tGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCCGCCCACGATCAATCCGAGCCGGAATCGCCGCCCGCACGGGGTAAAGCGTTAAGCGTAACCGTGATGCCAGCCAACGAAGTCGAGCCAGAGccc                >  1:6374159/1‑149 (MQ=255)
                                                                                                                                       gggggCGAGTCGTTTGGGGGGTGGCTGGGCAATGGATGGTTTGGTGACGATCCGGCCGAAGATAAAGCCGATCCGGAATAGCCGGCGTCACTGGGTAAAGCGTTACGGGTAAAGGTGTTGCCAGCCCAGGAAGTCGTGGCTGTGCCCGc              >  2:2218180/1‑149 (MQ=255)
                                                                                                                                         gggCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGGTACGCGTAAAGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCa            >  2:6416300/1‑149 (MQ=255)
                                                                                                                                          ggCGAGTCGCTCGGGGGGGGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCAc           <  2:3448930/149‑1 (MQ=255)
                                                                                                                                                 cGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTCAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCg    >  2:7490614/1‑149 (MQ=255)
                                                                                                                                                 cGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGACGTCGAGCCTGAGCCCGCCACGGCTCCg    >  2:4325115/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
GAGGGCTACGGCGGCGCTGCCGGCAGCCTGGCGGGCACCCTTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGT  >  NC_002947/3445346‑3445641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑