Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	5905117	5905171	55	5 [3]	[3] 4	PP_5175/PP_5176	HlyD family secretion protein/hypothetical protein

CCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGAATGCCACCGATTGCGCCGTGGGCGCT  >  NC_002947/5905146‑5905307                           |                                                                                                                                        ccGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTATCACAGGGAGGCTCACAATCAAGGAAGATCAAAATGCCGTTAGCCGa                            >  1:550668/1‑136 (MQ=255)              tCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACACGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGAATGCCACCGATTg               >  2:644849/1‑136 (MQ=255)                        tGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGAATGCCACCGATTGCGCCGAGGgc     >  2:380183/1‑136 (MQ=255)                           aTCAGTATCTGCCATATCCAGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGAATGCCACCGATTGCGCCGTGGGCGCt  >  2:142850/1‑136 (MQ=255)                           |                                                                                                                                        CCGCGAAGAGGCCTCCACAGCCATGTATCAGTATCTGCCATATCCAGAAACCATCAGGCATCGGCCATCCCCGTTCCAACCGCTACCTTTCACAGGGAGGCTCACATTCAAGGAAGATCAAAATGCCGTTAGCCGAATGCCACCGATTGCGCCGTGGGCGCT  >  NC_002947/5905146‑5905307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑