Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_002947	1,680,017	T→G	T276P (ACC→CCC)	PP_1475 ←	CAIB/BAIF family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,680,017	0	T	G	100.0%	228.8 / NA	60	T276P (ACC→CCC)	PP_1475	CAIB/BAIF family protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (38/22);  total (38/22)

GGCCGGCACTTCGGCAGTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGTCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTTGTGTGGATGGAGGAGGGCGTGATGCCC  >  NC_002947/1679892‑1680144                                                                                                                              |                                                                                                                                ggCCGGCACTTCGGCAGTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTg                                                                                                                       >  1:436858/1‑136 (MQ=255)  gCCGGCACTTCGGCAGTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTgg                                                                                                                      >  1:386112/1‑136 (MQ=255)     ggCACTTCGGCAGTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGa                                                                                                                   >  1:321352/1‑136 (MQ=255)     ggCACTTCGGCAGTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGa                                                                                                                   >  1:289773/1‑136 (MQ=255)     ggCACTTCGGCAGTGGTCAGCACCTGCATCAGTAGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGa                                                                                                                   >  1:788359/1‑136 (MQ=255)                tgTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGa                                                                                                        <  1:814919/135‑1 (MQ=255)                aGTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGGGCGGTCATcgcgc                                                                                                        >  2:659205/1‑135 (MQ=255)                aGTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGa                                                                                                        <  1:819003/136‑1 (MQ=255)                aGTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGa                                                                                                        <  1:311751/136‑1 (MQ=255)                      cAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATg                                                                                                  <  1:86899/136‑1 (MQ=255)                       aGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATgg                                                                                                 >  2:385529/1‑136 (MQ=255)                       aGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATgg                                                                                                 >  2:208527/1‑136 (MQ=255)                                 tCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCAGCAAGaa                                                                                       >  1:286092/1‑136 (MQ=255)                                      tGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCt                                                                                  >  1:628189/1‑136 (MQ=255)                                       gCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCtt                                                                                 <  2:321352/136‑1 (MQ=255)                                         tCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGa                                                                               <  1:181059/136‑1 (MQ=255)                                          ccAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGaa                                                                              >  2:59463/1‑136 (MQ=255)                                                gCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGc                                                                        >  1:213704/1‑136 (MQ=255)                                                      tGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCAcc                                                                  >  1:145282/1‑136 (MQ=255)                                                         tGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGtt                                                               >  1:831336/1‑136 (MQ=255)                                                           gCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGGTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTgg                                                             >  1:691427/1‑136 (MQ=255)                                                             ccAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGgcg                                                           >  2:469130/1‑136 (MQ=255)                                                                  ggTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGAt                                                      >  1:541186/1‑136 (MQ=255)                                                                  ggTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGAt                                                      >  1:238909/1‑136 (MQ=255)                                                                    tCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCt                                                    <  1:59463/136‑1 (MQ=255)                                                                        tCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGCCCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGcac                                                >  2:640571/1‑136 (MQ=255)                                                                           ccccATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATg                                             <  1:602205/136‑1 (MQ=255)                                                                              cATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTg                                                              >  2:798132/1‑116 (MQ=255)                                                                              cATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTg                                                              <  1:798132/116‑1 (MQ=255)                                                                                 aCAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGcc                                       >  1:751051/1‑136 (MQ=255)                                                                                   aGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGt                                     <  2:213704/136‑1 (MQ=255)                                                                                   aGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGt                                     >  2:499967/1‑136 (MQ=255)                                                                                   aGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGt                                     >  2:718301/1‑136 (MQ=255)                                                                                   aGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGt                                     >  1:297083/1‑136 (MQ=255)                                                                                        gTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGgcg                                >  2:137889/1‑136 (MQ=255)                                                                                        gTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGgcg                                >  2:14318/1‑136 (MQ=255)                                                                                        gTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGgcg                                >  1:326883/1‑136 (MQ=255)                                                                                        gTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGgcg                                >  1:241587/1‑136 (MQ=255)                                                                                        gTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGgcg                                >  1:115489/1‑136 (MQ=255)                                                                                        gTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTAGTTGGCGACGTCATCGCGACCGATGGCCTGCATGAAGCCCTTGAAGAAGGCATAAACGTTGGCGCCGATCTTCACATGCTAGACGTCGccg                                >  2:500573/1‑136 (MQ=255)                                                                                         tCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGgcgc                               >  1:488080/1‑136 (MQ=255)                                                                                          cACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCt                              <  1:350102/136‑1 (MQ=255)                                                                                          cACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCt                              <  2:297083/136‑1 (MQ=255)                                                                                          cACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCt                              <  1:260355/136‑1 (MQ=255)                                                                                           acgacgCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGCTCTGCACATGCTTGCCGTCGgcgcgt                             >  2:805568/1‑134 (MQ=255)                                                                                           acgacgCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCtt                             >  1:405372/1‑136 (MQ=255)                                                                                              ccgCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTtgtg                          <  2:133354/135‑1 (MQ=255)                                                                                              acgCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTtgtg                          <  2:488080/136‑1 (MQ=255)                                                                                              acgCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTtgtg                          <  2:795227/136‑1 (MQ=255)                                                                                                gCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTtgtgtg                        <  2:628189/136‑1 (MQ=255)                                                                                                gCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTtgtgtg                        <  1:156256/136‑1 (MQ=255)                                                                                                     tCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGa                                                                                                    <  2:552245/55‑1 (MQ=255)                                                                                                     tCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGa                                                                                                    >  1:552245/1‑55 (MQ=255)                                                                                                       gcgGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTtgtgtg                        <  1:754098/129‑1 (MQ=255)                                                                                                       gcgGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTtgtgtg                        >  2:754098/1‑129 (MQ=255)                                                                                                          gCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTTGTGTGGATGgaggag              >  2:734541/1‑136 (MQ=255)                                                                                                                  tGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTTGTGTGGATGGAGGAGGGCGTGAt      <  2:142543/136‑1 (MQ=255)                                                                                                                  tGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTTGTGTGGATGGAGGAGGGCGTGAt      <  1:137889/136‑1 (MQ=255)                                                                                                                      ggCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTTGTGTGGATGGAGGAGGGCGTGATGccc  >  2:781551/1‑136 (MQ=255)                                                                                                                      ggCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGCCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTTGTGTGGATGGAGGAGGGCGTGATGccc  >  2:712707/1‑136 (MQ=255)                                                                                                                              |                                                                                                                                GGCCGGCACTTCGGCAGTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGTCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTTGTGTGGATGGAGGAGGGCGTGATGCCC  >  NC_002947/1679892‑1680144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑