Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_002947 | 3,824,314 | C→G | A279P (GCG→CCG) | kguT ← | 2‑ketogluconate transporter, putative |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,824,314 | 0 | C | G | 97.1% | 124.5 / NA | 35 | A279P (GCG→CCG) | kguT | 2‑ketogluconate transporter, putative |
Reads supporting (aligned to +/- strand): ref base C (1/0); new base G (16/18); total (17/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.86e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGCTCGCTGCCCAAGGCGTAGGAACCATAGAACGCCAACGCGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGCCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGTTCGCCGCCTGCTTGAGGATCGACGGCAGCCACAGCACGAAGCCATACACGCCGATGCTCCAGCAGAAGTACTGCAGCGCCAGGA > NC_002947/3824184‑3824445 | tGCTCGCTGCCCAAGGCGTAGGAACCATAGAACGCCATCGCGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGt < 2:396211/136‑1 (MQ=255) gCTCGCTGCCCAAGGCGTAGGAACCATAGAACGCCAACGCGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTa > 2:197401/1‑136 (MQ=255) gCTGCCCAAGGCGTAGGAACCATAGAACGCCAACGCGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGc > 2:148793/1‑136 (MQ=255) ccAAGGCGTAGGAACCATAGAACGCCAACGCGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCgc > 2:434724/1‑135 (MQ=255) ccAAGGCGTAGGAACCATAGAACGCCAACGCGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGa > 1:197339/1‑136 (MQ=255) ccAAGGCGTAGGAACCATAGAACGCCAACGCGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGa > 1:634944/1‑136 (MQ=255) aaGGCGTAGGAACCATAGAACGCCAACGCGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGAgg < 2:645472/136‑1 (MQ=255) gTAGGAACCATAGAACGCCAACGCGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGAGgccagc < 2:397991/136‑1 (MQ=255) ggAACCATAGAACGCCAACGCGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGccagccag < 2:792896/136‑1 (MQ=255) ggAACCATAGAACGCCAACGCGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGccagccag < 2:396115/136‑1 (MQ=255) ggAACCATAGAACGCCAACGCGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGccagccag < 2:451053/136‑1 (MQ=255) aaCCATAGAACGCCAACGCGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGCCagccagcc > 1:70363/1‑136 (MQ=255) cATAGAACGCCAACGCGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGCCAGCCAGCCGGc < 1:131789/136‑1 (MQ=255) tAGAACGCCAACGCGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCt > 1:310681/1‑136 (MQ=255) tAGAACGCCAACGCGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCt < 2:84282/136‑1 (MQ=255) aGAACGCCAACGCGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTg > 2:208479/1‑136 (MQ=255) ccAACGCGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGat < 2:305559/136‑1 (MQ=255) cAACGAGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCTCTTTAGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGCCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGata > 1:799222/1‑136 (MQ=255) cgGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGAc > 2:206140/1‑136 (MQ=255) gCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGt < 2:310681/136‑1 (MQ=255) aTCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGTTcg > 2:145534/1‑136 (MQ=255) tagcagcGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGTTcgcc < 2:96927/135‑1 (MQ=255) gcttgcgcttTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGTTCGCCGCCTGCTTGAGGATCGACGGCAg < 1:148793/136‑1 (MQ=255) gcttTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGTTCGCCGCCTGCTTGAGGATCGACGGCAGCCACAg > 1:825868/1‑136 (MQ=255) gggTCGTACGCCCAGGACACGCCCACAATTGCCAGCACCGCCGGCAGGTAAGGCACCTAGGCCAGCCCGCCGGCCTGCACGATATCGACGTTCGCCGCCTGCTTGAGGATCGAGGGCAGCCACAGCACGACGCCAt < 1:197401/135‑1 (MQ=255) gACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGTTCGCCGCCTGCTTGAGGATCGACGGCAGCCACAGCACGAAGCCATACACGc < 1:206140/136‑1 (MQ=255) cAGGACACGCCCACCATTGCCAGACCCGCGGGCATGTACGGCACCTTGCCCTGCCTGCCGGCCTGCACGATATCCACGTTCCCCGCGTGCTTGAGCATCGACGGCACCCACAGCACTACCCCAAACACGCCGATGc < 2:825868/136‑1 (MQ=255) gcacacGCCCACCATTGCCACCACCGCCGGCAGGTAAGGCACGGAGGCCAGCCAGCGGGCCTGCACTATTTCGACGTGCGCCGCGTGGTTGAGGAGCGACGGCAGCCACAGCACGAAGCCATACACGCCGATGCTc < 2:684558/134‑1 (MQ=255) ccaccaTTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGTTCGCCGCCTGCTTGAGGATCGACGGCAGCCACAGCACGAAGCCATACACGCCGATGCTCCAGCAGaa > 2:213683/1‑136 (MQ=255) caccaTTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGTTCGCCGCCTGCTTGAGGATCGACGGCAGCCACAGCACGAAGCCATACACGCCGATGCTCCAGCAGAAg > 1:684558/1‑136 (MQ=255) accaTTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGTTCGCCGCCTGCTTGAGGATCGACGGCAGCCACAGCACGAAGCCATACACGCCGATGCTCCAGCAGAAGt > 1:720337/1‑136 (MQ=255) accaTTGCCAGCACCGCCGGCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGTTCGCCGCCTGCTTGAGGATCGACGGCAGCCACAGCACGAAGCCATACACGCCGATGCTCCAGCAGAAGt > 2:539844/1‑136 (MQ=255) cAGCACCGCCGGCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGTTCGCCGCCTGCTTGAGGATCGACGGCAGCCACAGCACTAAGCCATACACGCCGATGCTCCAGCAGAAGTACTGCAgc < 1:208479/136‑1 (MQ=255) cAGCACCGCCGGCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGTTCGCCGCCTGCTTGAGGATCGACGGCAGCCACAGCACGAAGCCATACACGCCGATGCTCCAGCAGAAGTACTGCAgc < 1:657061/136‑1 (MQ=255) aGCACCGCCGGCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGTTCGCCGCCTGCTTGAGGATCGACGGCAGCCACAGCACGAAGCCATACACGCCGATGCTCCAGCAGAAGTACTGCAgcg > 1:666926/1‑136 (MQ=255) cgccggCAGGTAAGGCACCGAGGCCACCCAGCCGGCCTGCACGATATCGACGTGCGCCGCCTGCTTGAGGATCGACGGCAGCCACACCACGACGCCATACACGCCGATGCTCCAGCAGAAGTACTGCAGCGCCAgg < 2:70363/136‑1 (MQ=255) gccggcAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGTTCGCCGCCTGCTTGAGGATCGACGGCAGCCACAGCACGAAGCCATACACGCCGATGCTCCAGCAGAAGTACTGCAGCGCCAGga > 1:701918/1‑136 (MQ=255) | TGCTCGCTGCCCAAGGCGTAGGAACCATAGAACGCCAACGCGGCAATCAGCAGCGGCGGCCAGACGAAGCGCTTGCGCTTTTGCAGGCGGTCGGACGCCCAGGACACGCCCACCATTGCCAGCACCGCCGCCAGGTAAGGCACCGAGGCCAGCCAGCCGGCCTGCACGATATCGACGTTCGCCGCCTGCTTGAGGATCGACGGCAGCCACAGCACGAAGCCATACACGCCGATGCTCCAGCAGAAGTACTGCAGCGCCAGGA > NC_002947/3824184‑3824445 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |