| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 4,637,297 | A→G | S143P (TCT→CCT) | uvrY ← | BarA/UvrY two‑componenent system response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,637,297 | 0 | A | G | 96.0% | 83.4 / ‑4.0 | 25 | S143P (TCT→CCT) | uvrY | BarA/UvrY two‑componenent system response regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (8/16); total (8/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 | |||||||||||
TCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTG > NC_002947/4637168‑4637415 | tCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTg < 1:608140/136‑1 (MQ=255) cGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCg > 1:133083/1‑136 (MQ=255) atgcgTAAGTTTTGTCGGGCTTGGGCGAGAGGCAGAAGTTGTCGGAGTTGATCTGGAGTTTCTGGCAGCCGACGATGATCAGGGCAATCTGGATTTGCCGTTGGGTCAAGGCGTCGAAGGGAGGCGCCTGCGGGTg < 1:220972/132‑1 (MQ=255) aaCGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTg < 2:133083/136‑1 (MQ=255) tggCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAActgc > 1:37443/2‑136 (MQ=255) gggCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAActgc > 2:602470/1‑136 (MQ=255) gggCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAActgc > 1:120865/1‑136 (MQ=255) gggCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAActgc > 1:79559/1‑136 (MQ=255) cGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTgg < 2:768373/136‑1 (MQ=255) ggCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGAt > 1:270329/1‑136 (MQ=255) aaCTTGTCGGAGTTGATCTGCTCTTTCTGGCATCCTACGATCATCAGGGCAATCTGGATTTCCCGTTCGGTCAACGCGTCGAACGGAGGCCCCTGCGGCTGGAAAGGTTTCAGCGCCAACTGCTGGGCTATCTGCg < 2:615328/136‑1 (MQ=255) aaCTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCg < 2:55363/136‑1 (MQ=255) aaCTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCg < 1:401074/136‑1 (MQ=255) aaCTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCg < 2:754348/136‑1 (MQ=255) cACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCg < 1:410109/136‑1 (MQ=255) cACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCg < 1:128924/136‑1 (MQ=255) gggCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAgg < 1:661773/135‑1 (MQ=255) ggCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGc > 2:782543/1‑136 (MQ=255) ccGACGATCATCTGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGAc < 2:571989/136‑1 (MQ=255) acaGCGCAAGCTGGATTTCCCGTGCGCACACCGCCGCGAACGGAGGCCCCTGCGGCGGGAACGGTTCCAGCGCCAACGGCTGGGCGATCTGCGGGCGGATATCGCGCGGGCCGGCAAAGGCCAGACGAATGGCCTg < 2:663724/135‑1 (MQ=255) ggCAATCTGGAGTTCCCGTTCGGACAACGCGGCGAACGGAGGCCCCTGCGGCGGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGAcc < 1:589170/136‑1 (MQ=255) tCTGGATTCCCCCTTCGCACACCGCGGCGACCGGAGGCCCCTGCGGGTGTAACGGTTTCCGCGCCAACTGCGGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTc < 1:568952/136‑1 (MQ=255) ggATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTc > 1:231080/1‑136 (MQ=255) tCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGc < 2:79559/136‑1 (MQ=255) cAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGTTCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTACGTCAAGGCCTGCACCCTTg < 2:37443/136‑1 (MQ=255) | TCCGATAACGGTAAGTATTGACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTG > NC_002947/4637168‑4637415 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |