Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	4969383	4969483	101	3 [1]	[1] 2	fliD	flagellar filament capping protein

TCAAGGTCTGGGGATCACCGCTATTGTTTACGACGGAAGAAACTCCTCCAGCAAAAACATCCGTGGTGATCTTCGAAGAAGTGGCGAGCTGAGTGACTTCCAACGCGTAGTTACCCGCAGAAGCGGACGCGGTCACGGTTGCCTTGGCGACTTTTTCATCCGAAGACGTACCCGCAAGCCCTGTGAAAG  >  NC_002947/4969247‑4969435                                                                                                                                        |                                                      tCAAGGTCTGGGGATCACCGCTATTGTTTACGACGGAAGAAACTCCTCCAGCAAAAACATCCGTGGTGATCTTCGAAGAAGTGGCGAGCTGAGTGACTTCCAACGCGTAGTTACCCGCAGAAGCGGACGCGGTCAc                                                       >  1:14289/1‑136 (MQ=255) tCAAGGTCTGGGGATCACCGCTATTGTTTACGACGGAAGAAACTCCTCCAGCAAAAACATCCGTGGTGATCTTCGAAGAAGTGGCGAGCTGAGTGACTTCCAACGCGTAGTTACCCGCAGAAGCGGACGCGGTCAc                                                       >  2:19363/1‑136 (MQ=255)                                                      aaaaCATCCGTGGTGATCTTCGAAGAAGTGGCGAGCTGAGTGACTTCCAACGCGTAGTTACCCGCAGAAGCGGACGCGGTCACGGTTGCCTTGGCGACTTTTTCATCCGAAGACGTACCCGCAAGCCCTGTGAAAg  <  1:19363/136‑1 (MQ=255)                                                                                                                                        |                                                      TCAAGGTCTGGGGATCACCGCTATTGTTTACGACGGAAGAAACTCCTCCAGCAAAAACATCCGTGGTGATCTTCGAAGAAGTGGCGAGCTGAGTGACTTCCAACGCGTAGTTACCCGCAGAAGCGGACGCGGTCACGGTTGCCTTGGCGACTTTTTCATCCGAAGACGTACCCGCAAGCCCTGTGAAAG  >  NC_002947/4969247‑4969435

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑